Browse Element(s) Details


Os.20179.1.S1_at

Description gb:AK059869.1
DB_XREF= gi:32969887
TID=Os.20179.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0027B08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-E08, full insert sequence.
FL= gb:AK059869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61580Os.26697.2.S1_x_at11/113+34857548..34861623expressed protein
LOC_Os03g61580Os.26697.1.S1_at10/113+34857548..34861623expressed protein
LOC_Os03g61580OsAffx.30311.1.S1_at1/113+34857548..34861623expressed protein
LOC_Os03g61590Os.34488.1.S1_at11/113+34862228..34862751expressed protein
LOC_Os03g61600Os.13812.1.S1_a_at11/113+34862852..34865607Phosphoribosylformylglycinamidine cyclo-ligase,chloroplast/mitochondrial precursor, putative, expressed
LOC_Os03g61610OsAffx.22651.2.S1_x_at10/113+34866275..34867556hypothetical protein
LOC_Os03g61610OsAffx.22651.2.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61610Os.51329.1.S1_at9/113+34866275..34867556hypothetical protein
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20179.1.S1_at--10--6011Chr03:34882424..34882444 (21 bp)
GAGAGCATCACTTGAACAGGTTCAG
LOC_Os03g61640
Os.20179.1.S1_at--419--691Chr03:34882714..34882738 (25 bp)
AGACCCAGGTAGCTTTAGTGAACAA
LOC_Os03g61640
Os.20179.1.S1_at--179--4711Chr03:34883171..34883195 (25 bp)
GCTGGCTGCCCAGAATGAACCTGAG
LOC_Os03g61640
Os.20179.1.S1_at--844--8131Chr03:34883198..34883222 (25 bp)
GGACATAGACCCTGATGTTGCTGCC
LOC_Os03g61640
Os.20179.1.S1_at--212--4331Chr03:34883221..34883245 (25 bp)
CCATGATGGGTTTCGGAGGCTTCCG
LOC_Os03g61640
Os.20179.1.S1_at--878--7991Chr03:34883235..34883259 (25 bp)
GGAGGCTTCCGTTCCTCAAAGAAAT
LOC_Os03g61640
Os.20179.1.S1_at--861--2991Chr03:34883257..34883281 (25 bp)
AATGAATGATCCATGGCGGCCTTTT
LOC_Os03g61640
Os.20179.1.S1_at--875--10351Chr03:34883281..34883305 (25 bp)
TTTTGTGACCTGTGGTTTCTTTCAG
LOC_Os03g61640
Os.20179.1.S1_at--620--1211Chr03:34883366..34883390 (25 bp)
AGTTTTGTGCACCTCTTGATCCAAA
LOC_Os03g61640
Os.20179.1.S1_at--104--9771Chr03:34883479..34883503 (25 bp)
TAATCTGTGTATTTCGGTATCCAAG
LOC_Os03g61640
Os.20179.1.S1_at--1079--5831Chr03:34883514..34883538 (25 bp)
GACCTTGCTGTAATTCGATTCTCGC
LOC_Os03g61640
Target Sequence 
GAGAGCATCACTTGAACAGGTTCAGAAAAGGTTTGAGTCACTTAAGAAGAGGAAAGACCCAGGTAGCTTTAGTGAACAAG
ATTTGGATGAGAGAATATTGAAACAGCAGCAAGAGGATGAGGAGAGGAAGCGCCAACGCAAAGAAAAGAAGAAAGAGAAA
AAGAAAGAGCTGGCTGCCCAGAATGAACCTGAGGAGGACATAGACCCTGATGTTGCTGCCATGATGGGTTTCGGAGGCTT
CCGTTCCTCAAAGAAATGAATGATCCATGGCGGCCTTTTTTTGTGACCTGTGGTTTCTTTCAGGTCGAAGAGTATATGCA
CCTGGATTACAATATATATTTGTTTCTAAGGAACCAGGACAAGAGTTTTGTGCACCTCTTGATCCAAAGCTGCGTGGAAG
TGATTGAAAATAACTTTTGTAATCGCTACCAGATAGTATTTTATCTGTAAGGATGCATGAGATGTCGAAACAAGTTTAAT
CTGTGTATTTCGGTATCCAAGAGTGAATGGTGACCTTGCTGTAATTCGATTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis