Browse Element(s) Details


Os.11495.1.S1_at

Description gb:AK101289.1
DB_XREF= gi:32986498
TID=Os.11495.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G01, full insert sequence.
FL= gb:AK101289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6168011/11Huntingtin interacting protein K, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61620Os.23649.1.S1_a_at11/113+34871286..34876282expressed protein
LOC_Os03g61630Os.10216.1.S1_at11/113+34878200..34880299SEC13-related protein, putative, expressed
LOC_Os03g61640Os.20179.1.S1_at11/113+34880570..34883587expressed protein
LOC_Os03g61650OsAffx.13572.1.S1_at11/113+34884775..34885869hypothetical protein
LOC_Os03g61660NANA3+34886939..34890997retrotransposon protein, putative, unclassified
LOC_Os03g61670Os.47942.1.A1_at11/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61670Os.47353.1.A1_at3/113+34891134..34894839Calreticulin precursor, putative, expressed
LOC_Os03g61680Os.11495.1.S1_at11/113+34895958..34898320Huntingtin interacting protein K, putative, expressed
LOC_Os03g61690OsAffx.13573.1.S1_at11/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61690Os.25223.1.A1_at10/113+34899901..34903056protein phosphatase 2C family protein, putative, expressed
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11495.1.S1_at--470--10451Chr03:34896374..34896398 (25 bp)
TTAGCTGCCATCAAGATCAACCCTG
LOC_Os03g61680
Os.11495.1.S1_at--72--2471Chr03:34896215..34896239 (25 bp)
AACACTACGGGAGCACAAAGGCGAT
LOC_Os03g61680
Os.11495.1.S1_at--265--2951Chr03:34896198..34896222 (25 bp)
AAGGCGATGCTGTAGCTGCAGTCCG
LOC_Os03g61680
Os.11495.1.S1_at--67--9051Chr03:34896182..34896206 (25 bp)
TGCAGTCCGGTTCTTGCTTCGCTGA
LOC_Os03g61680
Os.11495.1.S1_at--892--4911Chr03:34896167..34896191 (25 bp)
GCTTCGCTGATTCTTACACATTTTG
LOC_Os03g61680
Os.11495.1.S1_at--950--4731Chr03:34896117..34896141 (25 bp)
GCTGTAGTTTGCTATTGCTTGCTGC
LOC_Os03g61680
Os.11495.1.S1_at--888--6191Chr03:34896089..34896113 (25 bp)
GAGGAATTTCTGTATCCACAATGAA
LOC_Os03g61680
Os.11495.1.S1_at--5--731Chr03:34896024..34896048 (25 bp)
ATGTTGCAAACTGGTCTCTGTTGTC
LOC_Os03g61680
Os.11495.1.S1_at--1074--8591Chr03:34896013..34896037 (25 bp)
TGGTCTCTGTTGTCTTCTTGTAAAA
LOC_Os03g61680
Os.11495.1.S1_at--197--10471Chr03:34895983..34896007 (25 bp)
TTCACTCAGGAGTTTATTGCCGTTT
LOC_Os03g61680
Os.11495.1.S1_at--1009--11Chr03:34895968..34895992 (25 bp)
ATTGCCGTTTATCCAAGGTCTTTCT
LOC_Os03g61680
Target Sequence 
TTAGCTGCCATCAAGATCAACCCTGCTGATGTTGAAATTATCGCTAACGAGCTTGAGTTGGACAAGAAGATTGCAGAGAG
AACACTACGGGAGCACAAAGGCGATGCTGTAGCTGCAGTCCGGTTCTTGCTTCGCTGATTCTTACACATTTTGCAAGATC
TATACACCATATGAAGCAGCTGTAGTTTGCTATTGCTTGCTGCTGAGAGGAATTTCTGTATCCACAATGAAACGATCATA
TTTGGCATCTATGTAGAACTTTTTTTCCATGNATGTTGCAAACTGGTCTCTGTTGTCTTCTTGTAAAACTTGGTTCACTC
AGGAGTTTATTGCCGTTTATCCAAGGTCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis