Browse Element(s) Details

Os.19976.1.S1_at

Description

gb:AK107160.1
DB_XREF= gi:32992369
TID=Os.19976.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0010E04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F01, full insert sequence.
FL= gb:AK107160.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g61310	10/11	D-mannose binding lectin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g61260	Os.10156.1.S1_a_at	11/11	3	+	34724407..34726283	50S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g61270	Os.38099.2.S1_x_at	11/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.38099.1.S1_at	10/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61270	Os.7260.1.S1_x_at	2/11	3	+	34730959..34732762	endo-beta-mannanase, putative, expressed
LOC_Os03g61280	Os.7260.1.S1_x_at	11/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280	Os.38099.2.S1_x_at	4/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290	OsAffx.22646.1.S1_at	11/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61290	OsAffx.4492.1.S1_x_at	1/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61310	Os.19976.1.S1_at	10/11	3	+	34749011..34752174	D-mannose binding lectin family protein, expressed
LOC_Os03g61319	OsAffx.25789.1.S1_at	11/11	3	+	34753071..34754021	No apical meristem protein
LOC_Os03g61330	Os.30021.1.S1_at	10/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330	Os.30021.2.S1_at	9/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340	Os.25535.1.S1_at	11/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.3.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.2.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.1.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.3.S1_x_at	6/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370	OsAffx.31869.1.S1_at	10/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.5.S1_x_at	4/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_at	2/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.2.S1_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.3.S1_s_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_x_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61380	OsAffx.22711.4.S1_at	11/11	3	+	34775361..34776347	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0004672	molecular_function	protein kinase activity
GO:0016301	molecular_function	kinase activity
GO:0030246	molecular_function	carbohydrate binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19976.1.S1_at--953--985	1	Chr03:34751293..34751317 (25 bp)	TACAACATTTCCGAGTGGGCATATG	LOC_Os03g61310
Os.19976.1.S1_at--121--395	1	Chr03:34751394..34751418 (25 bp)	CGGCATTTGGTGCACACAGAGTGAA	LOC_Os03g61310
Os.19976.1.S1_at--1072--735	1	Chr03:34751414..34751438 (25 bp)	GTGAACCTGTGATGCGACCAGCGAT	LOC_Os03g61310
Os.19976.1.S1_at--946--667	1	Chr03:34751446..34751470 (25 bp)	GTTGCTCTTATGATTGAAGGTGCCA	LOC_Os03g61310
Os.19976.1.S1_at--896--531	1	Chr03:34751461..34751485 (25 bp)	GAAGGTGCCATCGAAGTTCACCAGC	LOC_Os03g61310
Os.19976.1.S1_at--135--497	1	Chr03:34751497..34751521 (25 bp)	GCATCATATTCGCAGTCACTAACAT	LOC_Os03g61310
Os.19976.1.S1_at--324--67	1	Chr03:34751884..34751908 (25 bp)	ATGAAGTTTGCTTGAAGCGCTGCAA	LOC_Os03g61310
Os.19976.1.S1_at--992--115	1	Chr03:34751909..34751933 (25 bp)	AGTACAGCAAGGGTCGTCCGTCTAT	LOC_Os03g61310
Os.19976.1.S1_at--132--725	1	NONE	GTCCGTCTATCACCGGTTCAAATAC	NONE
Os.19976.1.S1_at--1086--591	1	Chr03:34751951..34751975 (25 bp)	GAGCTTGCATCATGGAACACCCTGA	LOC_Os03g61310
Os.19976.1.S1_at--67--635	1	Chr03:34752074..34752098 (25 bp)	GATGCTGTTATGCTAGAAGTCTAAT	LOC_Os03g61310

Target Sequence

TACAACATTTCCGAGTGGGCATATGAGTGTGTGATGTTTGGTGATGCTGGCAAGGTGGCAGATGGTGTCGACGAAGCTGA
GCTGGTGAGAATGGTGAACGTCGGCATTTGGTGCACACAGAGTGAACCTGTGATGCGACCAGCGATGNAGAGTGTTGCTC
TTATGATTGAAGGTGCCATCGAAGTTCACCAGCCCCCACCCCCTGCATCATATTCGCAGTCACTAACATGAGCTGCAAGC
ATAATTCTGAAAAAATGATGAAGTTTGCTTGAAGCGCTGCAAAGTACAGCAAGGGTCGTCCGTCTATCACCGGTTCAAAT
ACATGAGCTTGCATCATGGAACACCCTGAAAATTGACAACCAAGTCTTTTACATTATGCANGCTATAAGTTTTACATTTT
GATCGGTAGAATGCTATGGATGNCATAANTACAGGAACGGTCCTANCAGATGCTGTTATGCTAGAAGTCTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis