Browse Element(s) Details


Os.5010.1.S1_at

Description gb:AK108602.1
DB_XREF= gi:32993811
TID=Os.5010.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor kinase (OJ1111_B11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E12, full insert sequence.
FL= gb:AK108602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6106011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5010.1.S1_at--381--1851Chr03:34627770..34627892 (25 bp)
ACGAAATGGGCGTTGCAGAGGTTCA
LOC_Os03g61060
Os.5010.1.S1_at--871--9631Chr03:34627586..34627610 (25 bp)
TCAGGAGGGAATACCACCGCCGGCA
LOC_Os03g61060
Os.5010.1.S1_at--676--4511Chr03:34627525..34627549 (25 bp)
GCCGACTCAAGACAGGAGCTCCGAT
LOC_Os03g61060
Os.5010.1.S1_at--295--3471Chr03:34627513..34627537 (25 bp)
CAGGAGCTCCGATTGGGTTAAGGTA
LOC_Os03g61060
Os.5010.1.S1_at--1025--1191Chr03:34627489..34627513 (25 bp)
AGTTTAGCATGCAACGATGTGATCC
LOC_Os03g61060
Os.5010.1.S1_at--1140--1871Chr03:34627476..34627500 (25 bp)
ACGATGTGATCCTAAGTTCCTACTT
LOC_Os03g61060
Os.5010.1.S1_at--992--10151Chr03:34627407..34627431 (25 bp)
TATCATCTTTAAGCTACCATGCCGC
LOC_Os03g61060
Os.5010.1.S1_at--1059--591Chr03:34627389..34627413 (25 bp)
ATGCCGCCATGCTTTGTGAATACAA
LOC_Os03g61060
Os.5010.1.S1_at--5--7871Chr03:34627355..34627379 (25 bp)
GGTTGGGTCTAACAATCTTTCTTAT
LOC_Os03g61060
Os.5010.1.S1_at--387--5511Chr03:34627254..34627278 (25 bp)
GAAAATTCTCAGTTCTTGGAAGGCT
LOC_Os03g61060
Os.5010.1.S1_at--298--8211Chr03:34627237..34627261 (25 bp)
GGAAGGCTTGCATCTATCATGTTAT
LOC_Os03g61060
Target Sequence 
ACGAAATGGGCGTTGCAGAGGTTCAGGGGAGGGGAGGTGGTGGTGGCCATGGACCCCAGGATCAGGAGGAGCCCGGCGTC
GGTGGCGACGGTGGAGAAGGTGATGGAGCTCGCCGAGCAGTGCGTCGCGCCGGCGAGGAAGGAGCGGCCGTCGATGCGGC
GGTGCACGGAGGCGCTGTGGTCGGTCAGGAGGGAATACCACCGCCGGCAGGACGCGCCCNGCCGCCGCCGCCGCCGTCGC
CGCGGCGCCGACTCAAGACAGGAGCTCCGATTGGGTTAAGGTAGTTTAGCATGCAACGATGTGATCCTAAGTTCCTACTT
AGGTTGAGATTTTGAGATGAATTAATTATTGTTGGTAATTAATTTATCATCTTTAAGCTACCATGCCGCCATGCTTTGTG
AATACAAAATATGAGGGGTTGGGTCTAACAATCTTTCTTATGAAAGTTAGAAAGATTGTTCTGTACTATAGGTTGATTAT
ATTATGTAAGAACATTTGTAATTTGTAAAGTTAACTTGAAAATTCTCAGTTCTTGGAAGGCTTGCATCTATCATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis