Browse Element(s) Details


OsAffx.10408.1.S1_at

Description tigr:9631.m06010
TID=OsAffx.10408.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6099211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed
LOC_Os03g60950OsAffx.25785.1.S1_at11/113+34572844..34574104hypothetical protein
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g61010Os.32832.1.S1_a_at11/113+34602292..34607157TPR-containing protein kinase, putative, expressed
LOC_Os03g61030Os.22563.1.S1_at10/113+34610236..34613605KOW motif family protein, expressed
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004056molecular_functionargininosuccinate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10408.1.S1_at--402--10511Chr03:34591856..34591939 (25 bp)
TTCAGGCGTTGAGCAGATCGGACCA
LOC_Os03g60992
OsAffx.10408.1.S1_at--109--2811Chr03:34590860..34590884 (25 bp)
AAGATCGCCTTCAGGATGGCCGTGG
LOC_Os03g60992
OsAffx.10408.1.S1_at--1041--8931Chr03:34590835..34590859 (25 bp)
TGACGGCCGTTTTCTTGAGGAGAGT
LOC_Os03g60992
OsAffx.10408.1.S1_at--337--6071Chr03:34590814..34590838 (25 bp)
GAGTTCAGGCGAATTCCAACTGCGC
LOC_Os03g60992
OsAffx.10408.1.S1_at--717--2111Chr03:34590787..34590811 (25 bp)
ACATGTCTCTGCAGGTGTCGAGCCT
LOC_Os03g60992
OsAffx.10408.1.S1_at--223--1691Chr03:34590767..34590791 (25 bp)
AGCCTGCAAGAGGAGTGCGCCCGTT
LOC_Os03g60992
OsAffx.10408.1.S1_at--640--9191Chr03:34590677..34590701 (25 bp)
TGCCATGACAAGCTGACCGTGGTTC
LOC_Os03g60992
OsAffx.10408.1.S1_at--1016--2551Chr03:34590374..34590542 (25 bp)
AACTGGTCTGACAGAACCCTCGTTG
LOC_Os03g60992
OsAffx.10408.1.S1_at--330--7311Chr03:34590339..34590363 (25 bp)
GTGCTCTCTGTACCGGGCAATTGAA
LOC_Os03g60992
OsAffx.10408.1.S1_at--631--8991Chr03:34590318..34590342 (25 bp)
TGAAGCAGTCACCAAGTTCATCGCC
LOC_Os03g60992
OsAffx.10408.1.S1_at--1047--1211Chr03:34590304..34590328 (25 bp)
AGTTCATCGCCACCACGGAGAAGGG
LOC_Os03g60992
Target Sequence 
TTCAGGCGTTGAGCAGATCGGACCAAGTGTGTGTTTCTTGGGCTCAGGCGTTAAGCAGACGAAGCTGGTCAAGATCGCCT
TCAGGATGGCCGTGGTGACGGCCGTTTTCTTGAGGAGAGTTCAGGCGAATTCCAACTGCGCCGACATGTCTCTGCAGGTG
TCGAGCCTGCAAGAGGAGTGCGCCCGTTTCCTGGATTCGTTCGTGGCCGGGGAGGAGATCGCGGGCCACGACGCGGTCCG
CATGCTCGTCGGCTGCCATGACAAGCTGACCGTGGTTCTCTCCGCCTACGGCGGCGCCGGCCGGGACGACGTCGACGAGG
GACAGGCGCCGCCGGTCGTCGTCCCGCCCGGAGGACAGATCGACACCCACCTCCTCGACTTGTTCCTCATTGGGACCTCC
GAGCTACCAACCAACTGGTCTGACAGAACCCTCGTTGCCCAGCTGACGTGCTCTCTGTACCGGGCAATTGAAGCAGTCAC
CAAGTTCATCGCCACCACGGAGAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis