Browse Element(s) Details


OsAffx.25785.1.S1_at

Description tigr:9631.m06005
TID=OsAffx.25785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6095011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed
LOC_Os03g60950OsAffx.25785.1.S1_at11/113+34572844..34574104hypothetical protein
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25785.1.S1_at--322--5771Chr03:34573868..34573892 (25 bp)
GACGATCTGGTGCTACTCGCTGCAT
LOC_Os03g60950
OsAffx.25785.1.S1_at--399--6851Chr03:34573799..34573823 (25 bp)
GTTTGGGTGGATATCCTTCGACCTT
LOC_Os03g60950
OsAffx.25785.1.S1_at--318--31Chr03:34573733..34573757 (25 bp)
ATTGGAACATGTTTGGCCCTTTGAC
LOC_Os03g60950
OsAffx.25785.1.S1_at--202--4551Chr03:34573718..34573742 (25 bp)
GCCCTTTGACTTGATGCGAGCACAT
LOC_Os03g60950
OsAffx.25785.1.S1_at--538--3991Chr03:34573684..34573708 (25 bp)
CGTGATGCTGCTGTACTGTGCAGGA
LOC_Os03g60950
OsAffx.25785.1.S1_at--625--3891Chr03:34573669..34573693 (25 bp)
CTGTGCAGGAGCTATCGGTGATTTC
LOC_Os03g60950
OsAffx.25785.1.S1_at--818--10611Chr03:34573647..34573671 (25 bp)
TTCGTGTTGCTATCTAACTGCTGCT
LOC_Os03g60950
OsAffx.25785.1.S1_at--273--1991Chr03:34573631..34573655 (25 bp)
ACTGCTGCTGCTTATTTCACTTTGA
LOC_Os03g60950
OsAffx.25785.1.S1_at--281--8311Chr03:34573593..34573617 (25 bp)
GGCTAATTAGCTTTGTAGACGCCAA
LOC_Os03g60950
OsAffx.25785.1.S1_at--113--6951Chr03:34573579..34573603 (25 bp)
GTAGACGCCAAGCTAGTGTTGATGT
LOC_Os03g60950
OsAffx.25785.1.S1_at--127--10191Chr03:34573440..34573464 (25 bp)
TATAGCATTTTCGTGGTAGTTCTGA
LOC_Os03g60950
Target Sequence 
GACGATCTGGTGCTACTCGCTGCATCTCCCATGTCGAATCTCCCCCCTTCCTTTGGGCCTAGGACGAGGGTTTGGGTGGA
TATCCTTCGACCTTTGTTCTGTTGTTTTTTTTTTGCATCGACCCATGCCTGCCAAATTGGAACATGTTTGGCCCTTTGAC
TTGATGCGAGCACATATATTTTTGCGTGATGCTGCTGTACTGTGCAGGAGCTATCGGTGATTTCGTGTTGCTATCTAACT
GCTGCTGCTTATTTCACTTTGATTAAGTTATCATTGGCTAATTAGCTTTGTAGACGCCAAGCTAGTGTTGATGTGAATTA
TAGTAGTGTAATGCAGCCACTTCTTGTTTTGTTGTGTTGTGCTTGGAAAGGTAGTCATGGTTTTAGGTTACAAACCTGTT
GGATGCTCAAATACAACAAAACGAGTGATATAGCATTTTCGTGGTAGTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis