Browse Element(s) Details


Os.7448.1.S1_at

Description gb:AK070153.1
DB_XREF= gi:32980177
TID=Os.7448.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044M23, full insert sequence.
FL= gb:AK104298.1 gb:AK070153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6093911/11Dolichol-phosphate mannosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed
LOC_Os03g60950OsAffx.25785.1.S1_at11/113+34572844..34574104hypothetical protein
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60992OsAffx.25788.1.S1_at11/113+34585146..34592484expressed protein
LOC_Os03g60992OsAffx.10408.1.S1_at11/113+34585146..34592484expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0005783cellular_componentendoplasmic reticulum
GO:0004582molecular_functiondolichyl-phosphate beta-D-mannosyltransferase activity
GO:0004686molecular_functioneukaryotic elongation factor-2 kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7448.1.S1_at--328--2191Chr03:34571525..34571549 (25 bp)
ACAAACATTACTACAGCCTGGAGCT
LOC_Os03g60939
Os.7448.1.S1_at--1156--4471Chr03:34571540..34571564 (25 bp)
GCCTGGAGCTTCTGATTTGACTGGA
LOC_Os03g60939
Os.7448.1.S1_at--144--191Chr03:34571680..34571704 (25 bp)
ATTTAATCTCCTCGTGTGTCAGCAA
LOC_Os03g60939
Os.7448.1.S1_at--514--6151Chr03:34571892..34571915 (24 bp)
GAGGTTCCAATAACTTTTGTCGATA
LOC_Os03g60939
Os.7448.1.S1_at--378--8971Chr03:34571964..34571988 (25 bp)
TGAAAGGCCTTGTTTATCTGCTGCT
LOC_Os03g60939
Os.7448.1.S1_at--495--10351Chr03:34571976..34572000 (25 bp)
TTTATCTGCTGCTCACTACATAGGG
LOC_Os03g60939
Os.7448.1.S1_at--455--4871Chr03:34572009..34572033 (25 bp)
GCTAGGCGCTTAACTGTATCAGACA
LOC_Os03g60939
Os.7448.1.S1_at--28--6551Chr03:34572095..34572119 (25 bp)
GATTTTCTGACTTGCCAGTGGGTTC
LOC_Os03g60939
Os.7448.1.S1_at--288--3471Chr03:34572110..34572134 (25 bp)
CAGTGGGTTCTCGTACAGTGTATTT
LOC_Os03g60939
Os.7448.1.S1_at--250--7691Chr03:34572212..34572236 (25 bp)
GGGTACGGTTGCTTGTGTTCTACAC
LOC_Os03g60939
Os.7448.1.S1_at--270--6191Chr03:34572258..34572282 (25 bp)
GAGGACTGGGAGCAACTGTTTTCAT
LOC_Os03g60939
Target Sequence 
ACAAACATTACTACAGCCTGGAGCTTCTGATTTGACTGGATCATTCAGGCTATATAAACGGAATGTCCTAGAAGATTTAA
TCTCCTCGTGTGTCAGCAAGGGATATGTTTTCCAAATGGAAATGATTGTTAGGGCTACCAGGAAAGGTTATCACATTGAA
GAGGTTCCAATAACTTTTGTCGATAGGGTTTTTGGAACTTCAAAACTTGGTGGATCTGAGATAGTTGAGTATCTGAAAGG
CCTTGTTTATCTGCTGCTCACTACATAGGGNAAAAAANCGCTAGGCGCTTAACTGTATCAGACACAACTNGTGATAGANG
NACTTCAATTTGTTATATCTACAGTTTTGAGTTGCNTGAATTACTGATTTTCTGACTTGCCAGTGGGTTCTCGTACAGTG
TATTTGGTGTGTAAGTACACTTTCATGAGCAAGGGCAAGAACACAATTGTACCATCTATATATGAACTGCAGAGAAAGCT
TTGGGTACGGTTGCTTGTGTTCTACACTTTTTTTAGGTAAACCTCAAAGAGGACTGGGAGCAACTGTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis