Browse Element(s) Details


Os.6224.1.S1_at

Description gb:AK111129.1
DB_XREF= gi:32996338
TID=Os.6224.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0081B07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C10, full insert sequence.
FL= gb:AK111129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6090010/11expressed protein
LOC_Os03g321501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed
LOC_Os03g60890Os.20497.1.S1_at11/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60890Os.18942.2.S1_at3/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6224.1.S1_at--665--5892Chr03:34547008..34547032 (25 bp)
GAGCTGGCGTTCCAGATGTCTCAGA
LOC_Os03g60900
Os.6224.1.S1_at--1157--6671Chr03:34547000..34547024 (25 bp)
GTTCCAGATGTCTCAGATCCTCGAC
LOC_Os03g60900
Os.6224.1.S1_at--337--9251Chr03:34546781..34546805 (25 bp)
TCTTCGCAAACCCTAGGGTTCGTGC
LOC_Os03g60900
Os.6224.1.S1_at--877--6031Chr03:34546741..34546765 (25 bp)
GAGATCACACTATCACTTGATCCTA
LOC_Os03g60900
Os.6224.1.S1_at--1098--8831Chr03:34546724..34546748 (25 bp)
TGATCCTACATTACGTTGTCTTAGA
LOC_Os03g60900
Os.6224.1.S1_at--1133--7031Chr03:34546697..34546721 (25 bp)
GTAAACTAGCGGATCGTTCTGCTCT
LOC_Os03g60900
Os.6224.1.S1_at--28--4031Chr03:34546683..34546707 (25 bp)
CGTTCTGCTCTGTAGATTCGTTTTA
LOC_Os03g60900
Os.6224.1.S1_at--162--8771Chr03:34546666..34546690 (25 bp)
TCGTTTTAGCCGCAACACCTTCCTG
LOC_Os03g60900
Os.6224.1.S1_at--727--3631Chr03:34546648..34546672 (25 bp)
CTTCCTGGCTTGTATCCTCAAGAGA
LOC_Os03g60900
Os.6224.1.S1_at--407--5131Chr03:34546619..34546643 (25 bp)
GCACAATTTTTCTATCAGAACTCCT
LOC_Os03g60900
Os.6224.1.S1_at--119--8831Chr03:34546528..34546552 (25 bp)
TGATTGCGGAGACACTTGTGGCATT
NONE
Target Sequence 
GAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGA
CCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCG
CACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCC
TAGGGTTCGTGCCCCCTTCTCTCANACGAGATCACACTATCACTTGATCCTACATTACGTTGTCTTAGAATGTAAACTAG
CGGATCGTTCTGCTCTGTAGATTCGTTTTAGCCGCAACACCTTCCTGGCTTGTATCCTCAAGAGATTATGCACAATTTTT
CTATCAGAACTCCTTAATTTTAGGAGATCGTGACATGGATCCGTTCNGAGATATGGGGATATCGGTATGACATGAATATT
TGATTGCGGAGACACTTGTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis