Browse Element(s) Details


Os.20497.1.S1_at

Description gb:NM_185152.1
DB_XREF= gi:34897389
GEN=OSJNBb0081B07.8
TID=Os.20497.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20497 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative calmodulin-binding protein (OSJNBb0081B07.8), mRNA.
PROD=putative calmodulin-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6089011/11calmodulin-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed
LOC_Os03g60890Os.20497.1.S1_at11/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60890Os.18942.2.S1_at3/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20497.1.S1_at--13--8951Chr03:34543396..34543420 (25 bp)
TGACTGGACAGCTCAGGAGTTTAAC
LOC_Os03g60890
Os.20497.1.S1_at--62--2151Chr03:34543389..34543413 (25 bp)
ACAGCTCAGGAGTTTAACAATAACA
LOC_Os03g60890
Os.20497.1.S1_at--648--2931Chr03:34543349..34543373 (25 bp)
AAGGCAAATGAACCTTGCTTCTGGG
LOC_Os03g60890
Os.20497.1.S1_at--809--10371Chr03:34543319..34543343 (25 bp)
TTTTGTTGGCCTTACTAACGGCATC
LOC_Os03g60890
Os.20497.1.S1_at--456--6611Chr03:34543315..34543339 (25 bp)
GTTGGCCTTACTAACGGCATCAGTA
LOC_Os03g60890
Os.20497.1.S1_at--886--10431Chr03:34543308..34543332 (25 bp)
TTACTAACGGCATCAGTACAATGGG
LOC_Os03g60890
Os.20497.1.S1_at--914--5071Chr03:34543036..34543272 (25 bp)
GCAGCCATGATAGTGCTATTCAGCA
LOC_Os03g60890
Os.20497.1.S1_at--20--251Chr03:34543009..34543033 (25 bp)
ATATATGGATATATTGGCCCTCTTA
LOC_Os03g60890
Os.20497.1.S1_at--15--9711Chr03:34542981..34543005 (25 bp)
TCAAACCATGCAGATATTGGGCAGT
LOC_Os03g60890
Os.20497.1.S1_at--804--10231Chr03:34542967..34542991 (25 bp)
TATTGGGCAGTGGTATGTCAACAAA
LOC_Os03g60890
Os.20497.1.S1_at--1137--9191Chr03:34542876..34542900 (25 bp)
TCCACACAGCCTAATCAAAACAGCT
LOC_Os03g60890
Target Sequence 
TGACTGGACAGCTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTT
TGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATA
GTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTANTCTCAAACCATGCAGATATTGGGCAGTGGTATGTCAACA
AAGATGTGGGAGGTCACAGTTGANCATTCAAAAACTTGTATTCTCACTGACAAGGTGCATTTGTACTATCCACACAGCCT
AATCAAAACAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis