Browse Element(s) Details


Os.17149.2.S1_x_at

Description gb:NM_185150.1
DB_XREF= gi:34897385
GEN=OSJNBb0081B07.6
TID=Os.17149.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17149 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chloroplast RNA processing protein (OSJNBb0081B07.6), mRNA.
PROD=putative chloroplast RNA processing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6091011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed
LOC_Os03g60890Os.20497.1.S1_at11/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60890Os.18942.2.S1_at3/113+34542433..34544666calmodulin-binding protein, putative
LOC_Os03g60900Os.6224.1.S1_at10/113+34546528..34547149expressed protein
LOC_Os03g60910Os.17149.1.S1_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910Os.17149.2.S1_x_at11/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60910OsAffx.20433.1.S1_x_at1/113+34548697..34553294pentatricopeptide, putative, expressed
LOC_Os03g60920Os.15547.1.S1_at11/113+34553529..34555886methylase family protein, expressed
LOC_Os03g60930NANA3+34557191..34564387RNA recognition motif family protein
LOC_Os03g60939Os.7448.1.S1_at11/113+34569708..34572289Dolichol-phosphate mannosyltransferase, putative, expressed
LOC_Os03g60950OsAffx.25785.1.S1_at11/113+34572844..34574104hypothetical protein
LOC_Os03g60960OsAffx.25786.1.S1_x_at11/113+34575876..34577373UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os03g60976OsAffx.10407.1.S1_at11/113+34577953..34583576hypothetical protein
LOC_Os03g60976OsAffx.25788.2.S1_at11/113+34577953..34583576hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17149.2.S1_x_at--1124--10491Chr03:34550309..34550333 (25 bp)
TTAATGCACTCCTTGATGTCCTTTG
LOC_Os03g60910
Os.17149.2.S1_x_at--367--751Chr03:34550294..34550318 (25 bp)
ATGTCCTTTGGTGGTTTGGCCAGAA
LOC_Os03g60910
Os.17149.2.S1_x_at--143--3091Chr03:34550234..34550258 (25 bp)
AATATGGGCTCTTCCCTGAGTTATT
LOC_Os03g60910
Os.17149.2.S1_x_at--149--9991Chr03:34550203..34550227 (25 bp)
TACCAAGCTGGTCTGGTCTGCAGAT
LOC_Os03g60910
Os.17149.2.S1_x_at--1102--8471Chr03:34550058..34550082 (25 bp)
TGGCTGTGTCAGTGTGGCTCAATAA
LOC_Os03g60910
Os.17149.2.S1_x_at--348--671Chr03:34550010..34550034 (25 bp)
ATGAAGATCTTCCTCAGTTAGCCTC
LOC_Os03g60910
Os.17149.2.S1_x_at--1137--9591Chr03:34549701..34549725 (25 bp)
TCATCATCCTTCCATTATCCAAAAT
LOC_Os03g60910
Os.17149.2.S1_x_at--685--9231Chr03:34549631..34549655 (25 bp)
TCCAGGCAGCCATAGATTCTTCCAA
LOC_Os03g60910
Os.17149.2.S1_x_at--1091--5191Chr03:34549599..34549623 (25 bp)
GCAATTTCTGGTTTTGTTCCCATGA
LOC_Os03g60910
Os.17149.2.S1_x_at--597--551Chr03:34549558..34549582 (25 bp)
ATCCCCTGGTTCCAAATTGTACACT
LOC_Os03g60910
Os.17149.2.S1_x_at--1025--8571Chr03:34549513..34549537 (25 bp)
TGGTTCTGCCCATTTGACTGATGAA
LOC_Os03g60910
Target Sequence 
TTAATGCACTCCTTGATGTCCTTTGGTGGTTTGGCCAGAAGGGTCGAGCTGCAAGGGTTTTGGATCAAGCATTAAAATAT
GGGCTCTTCCCTGAGTTATTTCGTGATACCAAGCTGGTCTGGTCTGCAGATGTGCATAGGATGTCAGTAGGTGGATCATT
AGTGGCTGTGTCAGTGTGGCTCAATAAACTTTATGATAGACTAAAAGGCGATGAAGATCTTCCTCAGTTAGCCTCAGTTG
TTGTATTGAGGGGACAAATGGAGAAAAGCACAGTTACAAGGGGATTGCCGATTGCAAAAGTTGTGTACTCTTTTCTGAAT
GATACACTATCATCATCCTTCCATTATCCAAAATGGAACAAGGGACGAATCATATGTTTGAAGTCCCAGTTGAAAAAGCT
CCAGGCAGCCATAGATTCTTCCAATGGTGCTGCAATTTCTGGTTTTGTTCCCATGACAAACTCTCATTTGCCATCCCCTG
GTTCCAAATTGTACACTAGGGAGTCCCAAGCTGATAATGGTTCTGCCCATTTGACTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17149.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis