Browse Element(s) Details


Os.37217.1.S1_at

Description gb:AK070075.1
DB_XREF= gi:32980099
TID=Os.37217.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative FtsJ cell division protein (OSJNBb0081B07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044P22, full insert sequence.
FL= gb:AK102425.1 gb:AK070075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6076011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60720Os.2368.1.S1_at11/113+34447297..34450213Alpha-expansin 4 precursor, putative, expressed
LOC_Os03g60730Os.14508.1.S1_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60730Os.14508.2.S1_x_at11/113+34460682..34464908BED zinc finger family protein, expressed
LOC_Os03g60740Os.17911.1.S1_at11/113+34465420..34468030expressed protein
LOC_Os03g60750Os.37217.2.S1_at11/113+34468139..34470365FtsJ-like methyltransferase family protein, putative, expressed
LOC_Os03g60760Os.37217.1.S1_at11/113+34472116..34472762expressed protein
LOC_Os03g60780Os.6349.1.S1_a_at11/113+34475214..34478234Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os03g60790Os.33670.3.S1_s_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.2.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.1.S1_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60790Os.33670.3.S1_x_at11/113+34478451..34480250DnaJ domain containing protein, expressed
LOC_Os03g60800Os.26905.2.S1_x_at11/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60800Os.26905.1.A1_at9/113+34480491..34484229hAT family dimerisation domain containing protein, expressed
LOC_Os03g60810Os.44937.1.S1_at11/113+34484417..34486932Protein kinase domain containing protein, expressed
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37217.1.S1_at--395--3411Chr03:34472466..34472490 (25 bp)
CAGCAGCACGCACAGTGTGTTGGTT
LOC_Os03g60760
Os.37217.1.S1_at--883--8811Chr03:34472483..34472507 (25 bp)
TGTTGGTTGCTGCTACTCCTACATT
LOC_Os03g60760
Os.37217.1.S1_at--1115--6811Chr03:34472514..34472538 (25 bp)
GTGTTACTAGTACAGCTTTAGCCTT
LOC_Os03g60760
Os.37217.1.S1_at--763--2151Chr03:34472525..34472549 (25 bp)
ACAGCTTTAGCCTTTTGTGTAGGGA
LOC_Os03g60760
Os.37217.1.S1_at--642--7431Chr03:34472541..34472565 (25 bp)
GTGTAGGGATTGCTGCTAACTCTGC
LOC_Os03g60760
Os.37217.1.S1_at--19--4851Chr03:34472555..34472579 (25 bp)
GCTAACTCTGCAGTTGCATCTTGTT
LOC_Os03g60760
Os.37217.1.S1_at--497--6671Chr03:34472567..34472591 (25 bp)
GTTGCATCTTGTTTGGTGGTTTTTT
LOC_Os03g60760
Os.37217.1.S1_at--542--3231Chr03:34472600..34472624 (25 bp)
CAAGATGGATGTGCATTTGCTGTTC
LOC_Os03g60760
Os.37217.1.S1_at--1038--10711Chr03:34472616..34472640 (25 bp)
TTGCTGTTCTGCTTTTGTGATGGGA
LOC_Os03g60760
Os.37217.1.S1_at--827--5331Chr03:34472639..34472663 (25 bp)
GAAGTAGCTGTATCTATCTACCGCC
LOC_Os03g60760
Os.37217.1.S1_at--116--7031Chr03:34472718..34472742 (25 bp)
GTACATGTTATTCCAAGTTCAGAAA
LOC_Os03g60760
Target Sequence 
CAGCAGCACGCACAGTGTGTTGGTTGCTGCTACTCCTACATTATAGTAGTGTTACTAGTACAGCTTTAGCCTTTTGTGTA
GGGATTGCTGCTAACTCTGCAGTTGCATCTTGTTTGGTGGTTTTTTTTGTGGAGCAAGATGGATGTGCATTTGCTGTTCT
GCTTTTGTGATGGGAAGTAGCTGTATCTATCTACCGCCNTGCGTGTGAAATCCTGTTAATTTAGCAGGGGGAAAAAAACC
CTATGTATCTATGTACATGTTATTCCAAGTTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis