Browse Element(s) Details


Os.27063.1.S1_at

Description gb:AK058972.1
DB_XREF= gi:32968990
TID=Os.27063.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptide transport protein (OSJNBb0081B07.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D02, full insert sequence.
FL= gb:AK099193.1 gb:AK058972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6085011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60820Os.6533.1.S1_at11/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60820Os.5150.1.S1_at10/113+34493583..34499758sugar transporter family protein, putative, expressed
LOC_Os03g60830Os.35344.3.S1_x_at6/113+34502382..34503607hypothetical protein
LOC_Os03g60830Os.35344.18.S1_x_at5/113+34502382..34503607hypothetical protein
LOC_Os03g60830OsAffx.22940.5.S1_x_at3/113+34502382..34503607hypothetical protein
LOC_Os03g60840Os.7612.1.S1_at10/113+34506004..34507021Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os03g60850Os.27063.1.S1_at11/113+34513269..34515907POT family protein, expressed
LOC_Os03g60870Os.12050.1.S1_a_at11/113+34532068..34535425Ras-related protein Rab11A, putative, expressed
LOC_Os03g60880Os.18745.1.S1_at10/113+34536291..34540141Permease I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27063.1.S1_at--231--7811Chr03:34513823..34513847 (25 bp)
GGTCGGTCTCCAAGAATACTTCTAC
LOC_Os03g60850
Os.27063.1.S1_at--1112--1031Chr03:34513794..34513818 (25 bp)
AGGTGCCGGACAGCATGCGCAGCCT
LOC_Os03g60850
Os.27063.1.S1_at--1112--8251Chr03:34513735..34513759 (25 bp)
GGCAGCTTCCTGAGCAGCCAGCTGA
LOC_Os03g60850
Os.27063.1.S1_at--690--1691Chr03:34513720..34513744 (25 bp)
AGCCAGCTGATCACGGCGGTGGACC
LOC_Os03g60850
Os.27063.1.S1_at--469--9531Chr03:34513581..34513605 (25 bp)
TCTACGTGGTCATCGCCACCAGGTA
LOC_Os03g60850
Os.27063.1.S1_at--982--7831Chr03:34513560..34513584 (25 bp)
GGTACTCGTACAAGACCGTCATGGC
LOC_Os03g60850
Os.27063.1.S1_at--657--1593Chr01:16554742..16554761 (20 bp)
AGCTGCTGCTGCCTACTGATCAATA
NONE
Os.27063.1.S1_at--975--151Chr03:34513385..34513409 (25 bp)
ATTATGATCTGCTTTCGTGGTACGT
LOC_Os03g60850
Os.27063.1.S1_at--449--4191Chr03:34513373..34513397 (25 bp)
TTTCGTGGTACGTGACAACAACAAA
LOC_Os03g60850
Os.27063.1.S1_at--916--7931Chr03:34513338..34513362 (25 bp)
GGATTATGTCGTTCGTCCATGTATA
LOC_Os03g60850
Os.27063.1.S1_at--985--3053Chr01:16554912..16554935 (24 bp)
AATCTGCTTGTGATTGCCATCTGAT
NONE
Target Sequence 
GGTCGGTCTCCAAGAATACTTCTACGACCAGGTGCCGGACAGCATGCGCAGCCTCGGCATCGGCCTCTACCTCAGCGTCA
TCGGCGCCGGCAGCTTCCTGAGCAGCCAGCTGATCACGGCGGTGGACCGCGTCACCTCGCACGGCGGCGCCGCCGCCGGC
TGGTTCGGCAAGGACCTGAACAGCAGCAGGCTGGACCTCTTCTACTGGCTTCTCGCCTGCATCGGCGTCGCCAACCTCGT
CTTCTACGTGGTCATCGCCACCAGGTACTCGTACAAGACCGTCATGGCCGGCGGCAAGGTCGTCGACGACAAGGCCGGCG
ACATCGAGTGCGCCGCCGCCGCAGCTGCTGCTGCCTACTGATCAATATCAAGCAGTAGCTGATCGATTAGCTAGCTAGCT
AGAAAATCATGGTAAGAAAGAAAATGGCATCATCATGTATTATGATCTGCTTTCGTGGTACGTGACAACAACAAAAAAAT
TGTAAGGATTATGTCGTTCGTCCATGTATATGCTTAATCTGCTTGTGATTGCCATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis