Browse Element(s) Details


OsAffx.28883.1.S1_at

Description tigr:9635.m04332
TID=OsAffx.28883.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4321010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed
LOC_Os07g43170Os.10034.1.S1_at10/117+25876719..25880707UMP-CMP kinase family protein, expressed
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28883.1.S1_at--982--4471Chr07:25893201..25893225 (25 bp)
GCCGGTGTCCGGTGGGATGGAGGGT
NONE
OsAffx.28883.1.S1_at--306--7971Chr07:25893381..25893486 (25 bp)
GGATCTCGACGAGCATGACGATGGC
LOC_Os07g43210
OsAffx.28883.1.S1_at--938--451Chr07:25893383..25893488 (25 bp)
ATCTCGACGAGCATGACGATGGCGA
LOC_Os07g43210
OsAffx.28883.1.S1_at--393--10631Chr07:25893494..25893518 (25 bp)
TTGCGGTCACGGTGGTCCTCGAGCA
LOC_Os07g43210
OsAffx.28883.1.S1_at--110--1932Chr07:25893502..25893526 (25 bp)
ACGGTGGTCCTCGAGCACCTTGGTG
LOC_Os07g43210
OsAffx.28883.1.S1_at--812--8592Chr07:25893506..25893530 (25 bp)
TGGTCCTCGAGCACCTTGGTGGCCT
LOC_Os07g43210
OsAffx.28883.1.S1_at--1025--4313Chr07:25893519..25893543 (25 bp)
CCTTGGTGGCCTTGCGCAGCGCGTC
LOC_Os07g43210
OsAffx.28883.1.S1_at--851--7572Chr07:25893615..25893639 (25 bp)
GGGCGGAGCGCTGGCCCTGGCGCGT
LOC_Os07g43210
OsAffx.28883.1.S1_at--600--8471Chr07:25893632..25893656 (25 bp)
TGGCGCGTCATCCAACGCAGCGGCA
LOC_Os07g43210
OsAffx.28883.1.S1_at--944--9611Chr07:25893639..25893663 (25 bp)
TCATCCAACGCAGCGGCAGGAGGCG
LOC_Os07g43210
OsAffx.28883.1.S1_at--893--931Chr07:25893656..25893680 (25 bp)
AGGAGGCGCCGGAAAAGGCGACAAT
LOC_Os07g43210
Target Sequence 
GCCGGTGTCCGGTGGGATGGAGGGTGGGCGGGAGGCAGCAGCCGCGAAGGAGCTGGCCGGCGGTGGAGGTGGGGGCGCCG
TCGGAGCGGCGAGGCGAAGGGGGCCTCGAGCCGTCTCCCATCTGGTCGTCCTCCTCTGCCACCAGCGCCGACCACGCCGG
CTCCTCCCCTGGCCCGATGGGGATCTCGACGAGCATGACGATGGCGACGGGGTTGCGGTCACGGTGGTCCTCGAGCACCT
TGGTGGCCTTGCGCAGCGCGTCGCAGACGCAGACGGCCTACCCTGGCCCTGGGCGGCGGCGCAGTCGACGAGGCGGTCGA
CGATCTGGCAGGCGGGCGGAGCGCTGGCCCTGGCGCGTCATCCAACGCAGCGGCAGGAGGCGCCGGAAAAGGCGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis