Browse Element(s) Details


Os.10034.1.S1_at

Description gb:AF187062.1
DB_XREF= gi:6683810
GEN=ura6
TID=Os.10034.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10034 (NCBI UniGene Cluster)
DEF=Oryza sativa UMPCMP kinase a (ura6) mRNA, complete cds.
PROD=UMPCMP kinase a
FL= gb:AF187063.1 gb:AF187062.1 gb:AK072973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4317010/11UMP-CMP kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43160Os.56349.1.S1_at11/117+25865517..25869537trehalose-phosphatase family protein, expressed
LOC_Os07g43170Os.10034.1.S1_at10/117+25876719..25880707UMP-CMP kinase family protein, expressed
LOC_Os07g43180OsAffx.21309.1.S1_x_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43180OsAffx.21309.1.S1_at11/117+25882723..25883325Skp1 family, dimerisation domain containing protein
LOC_Os07g43190NANA7+25885163..25885573hypothetical protein
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10034.1.S1_at--174--1211Chr07:25878274..25878298 (25 bp)
AGTTTGCCTGTAATTGAGCACTACA
LOC_Os07g43170
Os.10034.1.S1_at--595--4751Chr07:25878094..25878118 (25 bp)
GCTGCAAAACCAATTTCTGAAGTGT
LOC_Os07g43170
Os.10034.1.S1_at--674--171Chr07:25878054..25878076 (23 bp)
ATTTTTGCCCCATATGCTAAGGTTG
LOC_Os07g43170
Os.10034.1.S1_at--1011--2431Chr07:25877812..25877836 (25 bp)
AAAAGGACCACAGAGGGCACAAATG
LOC_Os07g43170
Os.10034.1.S1_at--813--2191Chr07:25877794..25877818 (25 bp)
ACAAATGGTGGCGTGCTGTCAGAAA
LOC_Os07g43170
Os.10034.1.S1_at--1099--3991NONE
CGTGCTGTCAGAAAAGGCCTTGCTC
NONE
Os.10034.1.S1_at--299--4451Chr07:25877058..25877082 (25 bp)
GCCTTGCTCGAGTGTGACTATATAT
LOC_Os07g43170
Os.10034.1.S1_at--650--1191Chr07:25877002..25877026 (25 bp)
AGTTTTTCTTGGCTCCCATGAGCTA
LOC_Os07g43170
Os.10034.1.S1_at--718--4791Chr07:25876991..25877015 (25 bp)
GCTCCCATGAGCTACCTAATTATCA
LOC_Os07g43170
Os.10034.1.S1_at--437--351Chr07:25876940..25876964 (25 bp)
ATAAGTAGATCCGAGTCTCGCTGCC
LOC_Os07g43170
Os.10034.1.S1_at--760--4171Chr07:25876834..25876858 (25 bp)
CCCATCAGCTGTGCCATTACAAGAG
LOC_Os07g43170
Target Sequence 
AGTTTGCCTGTAATTGAGCACTACAATGCGAAGAACAAAGTTAAAAAGATTGATGCTGCAAAACCAATTTCTGAAGTGTT
TGAAGATGTCAAAGCCATTTTTGCCCCATATGCTAAGGTTGAATAGAGATAAAAAAAGGACCACAGAGGGCACAAATGGT
GGCGTGCTGTCAGAAAAGGCCTTGCTCGAGTGTGACTATATATCTGTGATTAAGAACCATTGATATAGAAGAAAAGTTTT
TCTTGGCTCCCATGAGCTACCTAATTATCAGTAGGCAATTCGTTTCGTTACCAGCAATAAGTAGATCCGAGTCTCGCTGC
CCCCATGGTGTACCGGCGTGTGTCCTCTGTAATGCTGTACTGTTGTATAATTTACCTCATGGATGATCAAACATTATGCC
CTCCCATCAGCTGTGCCATTACAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis