Browse Element(s) Details


OsAffx.28886.1.S1_at

Description tigr:9635.m04341
TID=OsAffx.28886.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4330010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28886.1.S1_at--203--1954Chr11:13992418..13992442 (25 bp)
ACGGCGACTCGATCTGGATTGGAGT
NONE
OsAffx.28886.1.S1_at--867--5411Chr07:25925487..25925507 (21 bp)
GAAGCGATACTATTCTGTTCGATAT
LOC_Os07g43300
OsAffx.28886.1.S1_at--987--2031NONE
ACTATTCTGTTCGATATGGTGTTCA
NONE
OsAffx.28886.1.S1_at--106--7431Chr07:25926736..25926760 (25 bp)
GTGTTCAGAGCATTGAGTGGGTCAT
LOC_Os07g43300
OsAffx.28886.1.S1_at--811--51Chr07:25926747..25926771 (25 bp)
ATTGAGTGGGTCATCTTCACCGTCA
LOC_Os07g43300
OsAffx.28886.1.S1_at--994--10491Chr07:25926762..25926786 (25 bp)
TTCACCGTCATGACGACCGTCGTGC
LOC_Os07g43300
OsAffx.28886.1.S1_at--602--5811Chr07:25926776..25926800 (25 bp)
GACCGTCGTGCTCATCGGTACACTT
LOC_Os07g43300
OsAffx.28886.1.S1_at--323--4831Chr07:25926785..25926809 (25 bp)
GCTCATCGGTACACTTGTCATCATT
LOC_Os07g43300
OsAffx.28886.1.S1_at--593--8731Chr07:25926800..25926906 (25 bp)
TGTCATCATTCTCCTTCCTGTTACA
LOC_Os07g43300
OsAffx.28886.1.S1_at--978--10111Chr07:25926963..25926987 (25 bp)
TATGATACGAGAAAGCCTGCACCTT
LOC_Os07g43300
OsAffx.28886.1.S1_at--538--5071Chr07:25926981..25927005 (25 bp)
GCACCTTCTATTTCCATTTGTACAA
LOC_Os07g43300
Target Sequence 
ACGGCGACTCGATCTGGATTGGAGTTTGGAGATAGATGAGAGGAAGGGGAAGCGATACTATTCTGTTCGATATGGTGTTC
AGAGCATTGAGTGGGTCATCTTCACCGTCATGACGACCGTCGTGCTCATCGGTACACTTGTCATCATTCTCCTTCCTGTT
ACACAGAAGGGAATGATGGAGGAGGTGCCCCTGCCCCCCAGTATGAAGAGATCAGAGGATATGATACGAGAAAGCCTGCA
CCTTCTATTTCCATTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis