Browse Element(s) Details


Os.9342.1.S1_at

Description gb:AK103419.1
DB_XREF= gi:32988628
TID=Os.9342.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1339_F05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128J19, full insert sequence.
FL= gb:AK103419.1 gb:AK073694.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4329011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9342.1.S1_at--1029--9292Chr07:25920616..25920637 (22 bp)
TCCGCCCTGAGCAAGTGCAACAAGA
LOC_Os07g43290
Os.9342.1.S1_at--995--10651Chr07:25919328..25919352 (25 bp)
TTCCGGTTCTGGGTCAGGATCAACA
LOC_Os07g43290
Os.9342.1.S1_at--136--6351Chr07:25919244..25919268 (25 bp)
GATGCTCATTGTAGCCACGGTTGCT
LOC_Os07g43290
Os.9342.1.S1_at--233--9491Chr07:25919214..25919238 (25 bp)
TCTGCTTTCTTACTATTACCTCTGA
LOC_Os07g43290
Os.9342.1.S1_at--267--1751Chr07:25919197..25919221 (25 bp)
ACCTCTGAAGATTTTTACCACATAT
LOC_Os07g43290
Os.9342.1.S1_at--620--3891Chr07:25919154..25919178 (25 bp)
CTGTGATTTGTATGCGCATTGCGCT
LOC_Os07g43290
Os.9342.1.S1_at--248--4591Chr07:25919141..25919165 (25 bp)
GCGCATTGCGCTGTGATTTATCAGT
LOC_Os07g43290
Os.9342.1.S1_at--1--6551Chr07:25919127..25919151 (25 bp)
GATTTATCAGTGACTCTTTTAGGGA
LOC_Os07g43290
Os.9342.1.S1_at--752--8051Chr07:25919105..25919129 (25 bp)
GGAGAGATCTGCTAATGTTGACTTC
LOC_Os07g43290
Os.9342.1.S1_at--79--2991Chr07:25919092..25919116 (25 bp)
AATGTTGACTTCTATAGCCGTGCCC
LOC_Os07g43290
Os.9342.1.S1_at--299--191Chr07:25919059..25919083 (25 bp)
ATTTCTCACTGTTTCCTGGATTGCT
LOC_Os07g43290
Target Sequence 
TCCGCCCTGAGCAAGTGCAACAAGAAATTTCCCGGTGCCTCTCCTACTGGAGCACCCGCACCATCTTCTTCCGGTTCTGG
GTCAGGATCAACACCGGCCACCGGCACGCCATCTTCACCGAAGTCGGCGGCGGCCCAATCTCCGGTCTCGGCGATGCTCA
TTGTAGCCACGGTTGCTGCACCTCTGCTTTCTTACTATTACCTCTGAAGATTTTTACCACATATGATCTAGTTTCTGAAA
CGCTGTGATTTGTATGCGCATTGCGCTGTGATTTATCAGTGACTCTTTTAGGGAGAGATCTGCTAATGTTGACTTCTATA
GCCGTGCCCGTGGTGCCATTTCTCACTGTTTCCTGGATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis