Browse Element(s) Details


Os.32430.1.S1_at

Description gb:AK100052.1
DB_XREF= gi:32985261
TID=Os.32430.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.32430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome4,At4g08540 (OJ1339_F05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157E21, full insert sequence.
FL= gb:AK060844.1 gb:AK100052.1 gb:AK105003.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4332211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein
LOC_Os07g43330Os.21364.2.S1_x_at11/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43330Os.21364.1.S1_at8/117+25938952..25941485DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os07g43340OsAffx.5622.1.S1_at11/117+25942601..25942986hypothetical protein
LOC_Os07g43350Os.32679.1.S1_at11/117+25944257..25948867Leucine Rich Repeat family protein, expressed
LOC_Os07g43360Os.9844.1.A1_at11/117+25957146..25961948histone acetyltransferase MYST1, putative, expressed
LOC_Os07g43364Os.52361.1.S1_at10/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.2.S1_x_at1/117+25962965..25964253expressed protein
LOC_Os07g43364OsAffx.22919.1.S1_x_at1/117+25962965..25964253expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32430.1.S1_at--272--2351Chr07:25938420..25938444 (25 bp)
AAAGAAGTGATGGTTAGGCGCTCAT
LOC_Os07g43322
Os.32430.1.S1_at--958--6771Chr07:25938432..25938456 (25 bp)
GTTAGGCGCTCATGTATTCTCTGAA
LOC_Os07g43322
Os.32430.1.S1_at--213--751Chr07:25938443..25938467 (25 bp)
ATGTATTCTCTGAAGCCAGGCTGTT
LOC_Os07g43322
Os.32430.1.S1_at--1038--5391Chr07:25938454..25938478 (25 bp)
GAAGCCAGGCTGTTAATTTAGGACA
LOC_Os07g43322
Os.32430.1.S1_at--113--191Chr07:25938469..25938493 (25 bp)
ATTTAGGACACTGCAAGCCTCTGCA
LOC_Os07g43322
Os.32430.1.S1_at--812--1671Chr07:25938484..25938508 (25 bp)
AGCCTCTGCATAGGCTTTCAGCTGA
LOC_Os07g43322
Os.32430.1.S1_at--202--8311Chr07:25938496..25938520 (25 bp)
GGCTTTCAGCTGATCATAAGGTTTT
LOC_Os07g43322
Os.32430.1.S1_at--1021--1431Chr07:25938533..25938557 (25 bp)
AGAACTGACCATAACCTGTGACAAT
LOC_Os07g43322
Os.32430.1.S1_at--950--7711Chr07:25938574..25938598 (25 bp)
GGGTGTAATTGATCAGCTGGCATCT
LOC_Os07g43322
Os.32430.1.S1_at--889--4711Chr07:25938589..25938613 (25 bp)
GCTGGCATCTGTAAAGCACCTTCAA
LOC_Os07g43322
Os.32430.1.S1_at--570--8751Chr07:25938634..25938658 (25 bp)
TGTACAGTACTTCCTATCCAATAAA
LOC_Os07g43322
Target Sequence 
AAAGAAGTGATGGTTAGGCGCTCATGTATTCTCTGAAGCCAGGCTGTTAATTTAGGACACTGCAAGCCTCTGCATAGGCT
TTCAGCTGATCATAAGGTTTTTGGTTGATGTACAGAACTGACCATAACCTGTGACAATGAATATGCAGAGAAGAGGGTGT
AATTGATCAGCTGGCATCTGTAAAGCACCTTCAATTTGTAAATATACATGTAATTGTACAGTACTTCCTATCCAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis