Browse Element(s) Details


OsAffx.22919.2.S1_x_at

Description tigr:9629.m01847
TID=OsAffx.22919.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1895011/11Peroxidase family protein
LOC_Os01g189704/11Peroxidase family protein
LOC_Os07g433641/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18950OsAffx.22919.2.S1_x_at11/111+10709917..10711049Peroxidase family protein
LOC_Os01g18950OsAffx.22919.1.S1_x_at5/111+10709917..10711049Peroxidase family protein
LOC_Os01g18960OsAffx.2035.1.S1_at11/111+10712534..10713258hypothetical protein
LOC_Os01g18970OsAffx.22919.1.S1_x_at11/111+10717197..10718401Peroxidase family protein
LOC_Os01g18970OsAffx.22919.2.S1_x_at4/111+10717197..10718401Peroxidase family protein
LOC_Os01g18980NANA1+10721000..10721317transposon protein, putative, unclassified
LOC_Os01g18990NANA1+10729390..10731345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19000NANA1+10731755..10736110retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22919.2.S1_x_at--77--4751Chr01:10710400..10710424 (25 bp)
GCTGATCTCCAACTTCGCGAAAAAG
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--685--9672Chr01:10717645..10717669 (25 bp)
TCACCCCGGAGGAGCTGGTCATCCT
LOC_Os01g18970
OsAffx.22919.2.S1_x_at--1153--5691Chr01:10710264..10710288 (25 bp)
GACTACCGCGACAACGTCCTGAACA
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--1040--3811Chr01:10710246..10710270 (25 bp)
CTGAACAAGACCTGCAAGTCGTCCT
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--866--8473Chr07:25963961..25963985 (25 bp)
TGGCGAACAACATCCGCGACATCGA
LOC_Os07g43364
OsAffx.22919.2.S1_x_at--173--4612Chr01:10717408..10717432 (25 bp)
GCGACTACCTGGACAACAGCTACTA
LOC_Os01g18970
OsAffx.22919.2.S1_x_at--1113--2731Chr01:10710090..10710114 (25 bp)
AAGAACAACCTGGTGCTGTTCCACT
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--733--5731Chr01:10710063..10710087 (25 bp)
GACTGGGCGCTCGTCGGAACCAACT
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--365--4512Chr11:5740897..5741030 (24 bp)
GCCGAGAACGGCACGCTGTGGAACA
NONE
OsAffx.22919.2.S1_x_at--123--8671Chr01:10709996..10710020 (25 bp)
TGTGGAACATCGACTTCGCGCAGGC
LOC_Os01g18950
OsAffx.22919.2.S1_x_at--1071--892Chr01:10717258..10717282 (25 bp)
AGGCGCTCGTCAAGCTCAGCAAGCT
LOC_Os01g18970
Target Sequence 
GCTGATCTCCAACTTCGCGAAAAAGGGGTTCACCCCGGAGGAGCTGGTCATCCTCTCCGGCGCGCACTCCATCGGCAAGG
CGCACTCCTCCAACTTCGACGACCGCCTCACCGCGCCGGACTCCGAGATCAACGCCGACTACCGCGACAACGTCCTGAAC
AAGACCTGCAAGTCGTCCTCCGCCGCGGCGAACCCGACGCTGGCGAACAACATCCGCGACATCGACGCGGCGACGCTGGG
GGACCTGGCGAGCTACGTCGTCCCGGCCGTCGGCGGCGACTACCTGGACAACAGCTACTACAAGAACAACAAGAACAACC
TGGTGCTGTTCCACTCCGACTGGGCGCTCGTCGGAACCAACTCCACGCTCCAGCACGTCAACGAGTACGCCGAGAACGGC
ACGCTGTGGAACATCGACTTCGCGCAGGCGCTCGTCAAGCTCAGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22919.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis