Browse Element(s) Details


OsAffx.27789.3.S1_s_at

Description tigr:9640.m00834
TID=OsAffx.27789.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0896011/11hAT dimerisation domain-containing protein, putative
LOC_Os07g2555011/11hypothetical protein
LOC_Os01g1892011/11hAT family dimerisation domain containing protein
LOC_Os08g3483011/11transposase, putative
LOC_Os09g1453011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08940NANA12+4666699..4668135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08960OsAffx.27789.3.S1_s_at11/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08960OsAffx.27789.2.S1_x_at5/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08970OsAffx.31656.1.S1_at11/1112+4693822..4695965hypothetical protein
LOC_Os12g08980NANA12+4697400..4698287SNARE domain containing protein, expressed
LOC_Os12g08990OsAffx.7532.1.S1_at11/1112+4701323..4701556hypothetical protein
LOC_Os12g09000Os.12097.1.S1_at11/1112+4705832..4710310thiamin biosynthesis protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27789.3.S1_s_at--14--5935Chr12:4684959..4684983 (25 bp)
GAGCATTACAGATGACTTGTCACGT
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--132--1315Chr12:4684968..4684992 (25 bp)
AGATGACTTGTCACGTGCTTTGCAA
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--30--695Chr12:4684970..4684994 (25 bp)
ATGACTTGTCACGTGCTTTGCAAAG
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--54--5695Chr12:4684972..4684996 (25 bp)
GACTTGTCACGTGCTTTGCAAAGAA
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--717--10775Chr12:4684975..4684999 (25 bp)
TTGTCACGTGCTTTGCAAAGAAAGG
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--841--1875Chr12:4684980..4685004 (25 bp)
ACGTGCTTTGCAAAGAAAGGACCAA
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--939--5855Chr12:4684999..4685023 (25 bp)
GACCAAGATATTGTTGAGGCAATGA
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--358--55Chr12:4685008..4685032 (25 bp)
ATTGTTGAGGCAATGAGTTTGCTCA
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--748--9796Chr12:4685187..4685211 (25 bp)
TAAGCATTACTATCATGTTGAGATC
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--549--415Chr12:4685198..4685222 (25 bp)
ATCATGTTGAGATCTATCTTGCAGC
LOC_Os12g08960
OsAffx.27789.3.S1_s_at--560--735Chr12:4685201..4685225 (25 bp)
ATGTTGAGATCTATCTTGCAGCCAT
LOC_Os12g08960
Target Sequence 
GAGCATTACAGATGACTTGTCACGTGCTTTGCAAAGAAAGGACCAAGATATTGTTGAGGCAATGAGTTTGCTCAAGGATG
TGAAAGAGCTCTTGCAGGAGAATGGATGGGAACCATTATTGAATAGGGGGATTTCATTCTATAATAAACATGTGATTAAA
GTGCCAAAAATGGACAAGGAAGTAAATGAAAGAGGGGCATCTACACGTCGAAGGCACAAGGTAACAAATAAGCATTACTA
TCATGTTGAGATCTATCTTGCAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27789.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis