Browse Element(s) Details


Os.12097.1.S1_at

Description gb:AK100920.1
DB_XREF= gi:32986129
TID=Os.12097.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133M06, full insert sequence.
FL= gb:AK122089.1 gb:AK066087.1 gb:AK100920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0900011/11thiamin biosynthesis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08960OsAffx.27789.3.S1_s_at11/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08960OsAffx.27789.2.S1_x_at5/1112+4684025..4685379hAT dimerisation domain-containing protein, putative
LOC_Os12g08970OsAffx.31656.1.S1_at11/1112+4693822..4695965hypothetical protein
LOC_Os12g08980NANA12+4697400..4698287SNARE domain containing protein, expressed
LOC_Os12g08990OsAffx.7532.1.S1_at11/1112+4701323..4701556hypothetical protein
LOC_Os12g09000Os.12097.1.S1_at11/1112+4705832..4710310thiamin biosynthesis protein, putative, expressed
LOC_Os12g09010NANA12+4711924..4712415hypothetical protein
LOC_Os12g09020NANA12+4713440..4714194retrotransposon protein, putative, unclassified
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12097.1.S1_at--142--1211Chr12:4709765..4709789 (25 bp)
AGTTTGCCTGGCATCTAAGCTGCCT
LOC_Os12g09000
Os.12097.1.S1_at--223--4871Chr12:4709796..4709820 (25 bp)
GCTATTGGCGGCATCAACGCTTCAA
LOC_Os12g09000
Os.12097.1.S1_at--864--2591Chr12:4709811..4709835 (25 bp)
AACGCTTCAAATGCAGGTTCAGTGA
LOC_Os12g09000
Os.12097.1.S1_at--1104--3451Chr12:4709830..4709854 (25 bp)
CAGTGATGGAGCTTGGTCTCCCAAA
LOC_Os12g09000
Os.12097.1.S1_at--325--2631Chr12:4709853..4709877 (25 bp)
AACCTCAAAGGCGTCGCAGTAGTCT
LOC_Os12g09000
Os.12097.1.S1_at--784--1171Chr12:4709870..4709894 (25 bp)
AGTAGTCTCCGCTCTGTTTGACCGT
LOC_Os12g09000
Os.12097.1.S1_at--850--5811Chr12:4709889..4709913 (25 bp)
GACCGTCCGAGTGTCGTAGCCGAAA
LOC_Os12g09000
Os.12097.1.S1_at--602--10731Chr12:4709934..4709958 (25 bp)
TTGACCAACACCTCTAGAACCTAGA
LOC_Os12g09000
Os.12097.1.S1_at--310--8891Chr12:4710085..4710109 (25 bp)
TGAGGAATCACAATCTTGCATCATT
LOC_Os12g09000
Os.12097.1.S1_at--633--6531Chr12:4710132..4710156 (25 bp)
GATTTCTTTTACATCTTTTGAGCAA
LOC_Os12g09000
Os.12097.1.S1_at--783--8331Chr12:4710209..4710233 (25 bp)
GGCTGTAACTTTCAACTTCTTTAAG
LOC_Os12g09000
Target Sequence 
AGTTTGCCTGGCATCTAAGCTGCCTGTGGTCGCTATTGGCGGCATCAACGCTTCAAATGCAGGTTCAGTGATGGAGCTTG
GTCTCCCAAACCTCAAAGGCGTCGCAGTAGTCTCCGCTCTGTTTGACCGTCCGAGTGTCGTAGCCGAAACAAGAAACATG
AAATCCATCTTGACCAACACCTCTAGAACCTAGAGCTACTACAATATTCTTTGTTCGAAGGGGATATGTTTATCAAAATG
AAGAGATGTTTCCAACTTTAATAATCAGAAGGCATTTCTTGTAATAATGCTTGATCAAAAGCATCTGTGATGCAGGGGAA
TGAGGAATCACAATCTTGCATCATTGGGATGTAAGGTACAATGTTCAGATTTCTTTTACATCTTTTGAGCAAATTATCCA
ACAAATTTTGTTGAAAGTTGGTAGTACAAAATGAAAGGGTGAAAGGCTGTAACTTTCAACTTCTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis