Browse Element(s) Details


OsAffx.31657.1.S1_at

Description tigr:9640.m00844
TID=OsAffx.31657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0906011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09000Os.12097.1.S1_at11/1112+4705832..4710310thiamin biosynthesis protein, putative, expressed
LOC_Os12g09010NANA12+4711924..4712415hypothetical protein
LOC_Os12g09020NANA12+4713440..4714194retrotransposon protein, putative, unclassified
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31657.1.S1_at--334--2231Chr12:4732840..4732864 (25 bp)
ACAATGTACTTCTACCTTGGTTTCA
LOC_Os12g09060
OsAffx.31657.1.S1_at--885--1251Chr12:4732781..4732805 (25 bp)
AGATTGCCCTATTCTTGGATTATGA
LOC_Os12g09060
OsAffx.31657.1.S1_at--564--10351Chr12:4732633..4732740 (25 bp)
TTTATGTCCCCTGAGATGCGTGAGA
LOC_Os12g09060
OsAffx.31657.1.S1_at--363--2551Chr12:4732580..4732604 (25 bp)
AACTGCAATAGTCACCGGGAGATCC
LOC_Os12g09060
OsAffx.31657.1.S1_at--273--6031Chr12:4732467..4732586 (25 bp)
GAGATCCCGCAGAAAGGTGTTTGAA
LOC_Os12g09060
OsAffx.31657.1.S1_at--255--5451Chr12:4732427..4732451 (25 bp)
GAACGCTACTATGCTGGGTGTCACG
LOC_Os12g09060
OsAffx.31657.1.S1_at--677--7091Chr12:4732411..4732432 (22 bp)
GTCACGGGTTGGATATCATGGTTCT
LOC_Os12g09060
OsAffx.31657.1.S1_at--967--3491Chr12:4731292..4731313 (22 bp)
CATGGTTCTGGAAGTTCGACCTGAA
LOC_Os12g09060
OsAffx.31657.1.S1_at--223--8151Chr12:4731227..4731251 (25 bp)
GGACACTTGGGCTAAATGACTCTAA
LOC_Os12g09060
OsAffx.31657.1.S1_at--1047--8931Chr12:4731211..4731235 (25 bp)
TGACTCTAATGTTCTCCCAATTTAC
LOC_Os12g09060
OsAffx.31657.1.S1_at--213--9191Chr12:4731095..4731184 (25 bp)
TGCCTTTAAGGTGCTCCGTGAGCAG
LOC_Os12g09060
Target Sequence 
ACAATGTACTTCTACCTTGGTTTCATTTGATGAAATCACATCCAATGCTCAAGGCAAGAAGATTGCCCTATTCTTGGATT
ATGATGGCACACTTTCGCCAATCGTAAATAATCCTGAGATGGCATTTATGTCCCCTGAGATGCGTGAGACCGTGAGGGAT
GCAGCGAAGATTTTTCCAACTGCAATAGTCACCGGGAGATCCCGCAGAAAGGTGTTTGAATTTGTAAAACTAGTAGAACG
CTACTATGCTGGGTGTCACGGGTTGGATATCATGGTTCTGGAAGTTCGACCTGAAGATGTTGCAGACAAAGGTAAAGTGA
TCAAATATCTTATAGGGACACTTGGGCTAAATGACTCTAATGTTCTCCCAATTTACATTGGAGATGACGAGACAGATGAA
TATGCCTTTAAGGTGCTCCGTGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis