Browse Element(s) Details


Os.49212.1.S3_at

Description gb:CB628885
DB_XREF= gi:29623874
DB_XREF=OSIIEb04L12.r
CLONE=OSIIEb04L12
TID=Os.49212.1
CNT=9
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.49212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033H14, full insert sequence
FL= gb:AK068584.1 gb:AK072237.1 gb:AK099037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0908911/11myosin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os12g09130NANA12+4774852..4776983hypothetical protein
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49212.1.S3_at--1049--2791Chr12:4748561..4748585 (25 bp)
AAGATGGGCCTACACCTACCTAGTG
LOC_Os12g09089
Os.49212.1.S3_at--1117--10071Chr12:4748541..4748565 (25 bp)
TAGTGGCTCAAGTCCAACATCTCAC
LOC_Os12g09089
Os.49212.1.S3_at--792--931Chr12:4748482..4748506 (25 bp)
AGGCACGTGACATTCTTCATCCAAA
LOC_Os12g09089
Os.49212.1.S3_at--1101--3311Chr12:4748419..4748443 (25 bp)
CACTTTCCATGCGTTGTTTGTCCCT
LOC_Os12g09089
Os.49212.1.S3_at--170--6571Chr12:4748357..4748381 (25 bp)
GATTCCGGTATGTGGACTCCATTCA
LOC_Os12g09089
Os.49212.1.S3_at--115--6851Chr12:4748322..4748346 (25 bp)
GTTTCCTGAATCGACTGCACAATTG
LOC_Os12g09089
Os.49212.1.S3_at--568--6291Chr12:4748288..4748312 (25 bp)
GATGATTGCCAGAACAAGCCGTTGA
LOC_Os12g09089
Os.49212.1.S3_at--896--111Chr12:4748258..4748282 (25 bp)
ATTCTTGTGGGCATACTGATGGACT
LOC_Os12g09089
Os.49212.1.S3_at--980--6231Chr12:4748241..4748265 (25 bp)
GATGGACTGGTATTTGCATTGCATA
LOC_Os12g09089
Os.49212.1.S3_at--422--1331Chr12:4748149..4748173 (25 bp)
AGAGTGTTGGTAATCCTACGGCTTT
LOC_Os12g09089
Os.49212.1.S3_at--888--3611Chr12:4748070..4748094 (25 bp)
CTTTTTTCTGGGTGACGTACTGACT
LOC_Os12g09089
Target Sequence 
AAGATGGGCCTACACCTACCTAGTGGCTCAAGTCCAACATCTCACTGATGTATAAGGTTCAAAACCCATCGTAAACCACA
GGCACGTGACATTCTTCATCCAAAGGAAACCAAGAGTTCCCCAGCCCCAGGACTGCAGATANCACTTTCCATGCGTTGTT
TGTCCCTCCCTGCATCACATGCAATCTGACATGTTNNTGGGGTTGATTCCGGTATGTGGACTCCATTCAATGACTGTNTG
TTTCCTGAATCGACTGCACAATTGTGGTTGATGGATGATTGCCAGAACAAGCCGTTGATGAGGATTCTTGTGGGCATACT
GATGGACTGGTATTTGCATTGCATATTGCATATGGTTCCTAGTAGTAGGAGGTTTGTGTGAATGTTTTGATCGGTGAGGC
TGAGTGAACAGTAGAGTGTTGGTAATCCTACGGCTTTNCCTCATTTTATGATGGGTTGAGGTATGGTCNANTTTCCATTC
GAGTGAGTNTTCTTTTTTCTGGGTGACGTACTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49212.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis