Browse Element(s) Details


Os.14936.1.S1_at

Description gb:AK100343.1
DB_XREF= gi:32985552
TID=Os.14936.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082E18, full insert sequence.
FL= gb:AK100343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0912011/11mRNA capping enzyme, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os12g09130NANA12+4774852..4776983hypothetical protein
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein
LOC_Os12g09150NANA12+4786617..4787184retrotransposon protein, putative, unclassified
LOC_Os12g09164OsAffx.16205.1.S1_at2/1112+4789962..4793210hypothetical protein
LOC_Os12g09164OsAffx.25292.1.S1_at1/1112+4789962..4793210hypothetical protein
LOC_Os12g09180NANA12+4793546..4793836hypothetical protein
LOC_Os12g09190Os.23820.1.A1_at11/1112+4795465..4799050expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006370biological_processmRNA capping
GO:0006397biological_processmRNA processing
GO:0004484molecular_functionmRNA guanylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14936.1.S1_at--171--9171Chr12:4763792..4763811 (20 bp)
TGCCCGGGTGGTGTTCCCTGATGAA
LOC_Os12g09120
Os.14936.1.S1_at--716--10731Chr12:4763259..4763283 (25 bp)
TTGACCCGCCTTCAATATCAGGGAA
LOC_Os12g09120
Os.14936.1.S1_at--757--7251Chr12:4763195..4763219 (25 bp)
GTCCTGCATGCGCATTCGAACAGAT
LOC_Os12g09120
Os.14936.1.S1_at--541--671Chr12:4762501..4762525 (25 bp)
ATGAACCTTCCTATGTATGCTGATA
LOC_Os12g09120
Os.14936.1.S1_at--592--8311Chr12:4762466..4762490 (25 bp)
GGCTCACGCGCGAAGTATGGCTCAA
LOC_Os12g09120
Os.14936.1.S1_at--92--7891Chr12:4762418..4762442 (25 bp)
GGTTATATGCATTCGTCTTACTTCT
LOC_Os12g09120
Os.14936.1.S1_at--293--851Chr12:4762357..4762381 (25 bp)
ATGGCAAAGGCTAGCTGGCCCAGGC
LOC_Os12g09120
Os.14936.1.S1_at--30--8471Chr12:4762342..4762366 (25 bp)
TGGCCCAGGCTGTAGCATGCATAGA
LOC_Os12g09120
Os.14936.1.S1_at--170--311Chr12:4762299..4762323 (25 bp)
ATAGCGAGCCTTATGCAGGCCGAGA
LOC_Os12g09120
Os.14936.1.S1_at--290--6431Chr12:4762258..4762282 (25 bp)
GATCTTTCTGTTGGTCATTCACATG
LOC_Os12g09120
Os.14936.1.S1_at--118--571Chr12:4762201..4762225 (25 bp)
ATCCTGTATTCTGTATATCCCTCTT
LOC_Os12g09120
Target Sequence 
TGCCCGGGTGGTGTTCCCTGATGAAGTTGACCCGCCTTCAATATCAGGGAAAATTGTTGAGTGCTCTTGGAATAAAGAAG
AGGACTGTTGGTCCTGCATGCGCATTCGAACAGATAAATCAACTCCTAATGATATCAATACTTACAGAAAGGTAATGAGG
AGCATCACTGATAACATTACTGAAGACAAGCTCCTGGAGGAAATATATGAGATCATGAACCTTCCTATGTATGCTGATAG
GAAAGCAAAGGCTCACGCGCGAAGTATGGCTCAACAACGAAGGAGATGATTAGGATTGGTTATATGCATTCGTCTTACTT
CTTAGAATTATAGAGAGTTGTAACCCTACAACCAACAGATGGCAAAGGCTAGCTGGCCCAGGCTGTAGCATGCATAGATA
ATGTTACTATATCTTCATAGCGAGCCTTATGCAGGCCGAGAATTTTTTTTTCAATATGATCTTTCTGTTGGTCATTCACA
TGTGTCATTTCAGAATGCTGTAAATCTTCAATTAATCCTGTATTCTGTATATCCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis