Browse Element(s) Details


Os.23820.1.A1_at

Description gb:AK111754.1
DB_XREF= gi:37988417
TID=Os.23820.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056F18, full insert sequence.
FL= gb:AK111754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0919011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os12g09130NANA12+4774852..4776983hypothetical protein
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein
LOC_Os12g09150NANA12+4786617..4787184retrotransposon protein, putative, unclassified
LOC_Os12g09164OsAffx.16205.1.S1_at2/1112+4789962..4793210hypothetical protein
LOC_Os12g09164OsAffx.25292.1.S1_at1/1112+4789962..4793210hypothetical protein
LOC_Os12g09180NANA12+4793546..4793836hypothetical protein
LOC_Os12g09190Os.23820.1.A1_at11/1112+4795465..4799050expressed protein
LOC_Os12g09200NANA12+4801307..4803874retrotransposon protein, putative, unclassified
LOC_Os12g09210Os.49901.1.S1_at11/1112+4806482..4809275retrotransposon protein, putative, unclassified, expressed
LOC_Os12g09220Os.55701.1.S1_at11/1112+4813524..4817470expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23820.1.A1_at--831--10751Chr12:4798057..4798081 (25 bp)
TTGACTATGATGTCCAGGCCGCCAT
LOC_Os12g09190
Os.23820.1.A1_at--436--891Chr12:4798072..4798525 (25 bp)
AGGCCGCCATTCGTATGTGGTTTCC
LOC_Os12g09190
Os.23820.1.A1_at--631--7491Chr12:4798517..4798541 (25 bp)
GTGGTTTCCAAAAGCCAAATCAGGT
LOC_Os12g09190
Os.23820.1.A1_at--602--7691Chr12:4798618..4798642 (25 bp)
GGGTCGACCTATGTTTTGTTTCAGA
LOC_Os12g09190
Os.23820.1.A1_at--642--2811Chr12:4798642..4798666 (25 bp)
AAGTTTGGTTAGATGGAGTCCGCTT
LOC_Os12g09190
Os.23820.1.A1_at--18--6091Chr12:4798657..4798681 (25 bp)
GAGTCCGCTTAGATGGTTTTGAAAC
LOC_Os12g09190
Os.23820.1.A1_at--502--7611Chr12:4798727..4798751 (25 bp)
GGGAAGCTGGCTTATGAGTCTCTTA
LOC_Os12g09190
Os.23820.1.A1_at--501--1151Chr12:4798743..4798767 (25 bp)
AGTCTCTTAGGCTTTCTCAACTTGT
LOC_Os12g09190
Os.23820.1.A1_at--848--3011Chr12:4798943..4798967 (25 bp)
AATGCTTATGAGTCTCTCAGGCTTT
LOC_Os12g09190
Os.23820.1.A1_at--824--3751Chr12:4798956..4798980 (25 bp)
CTCTCAGGCTTTCTCAACTTGTCAA
LOC_Os12g09190
Os.23820.1.A1_at--1071--7472Chr12:4798997..4799021 (25 bp)
GTGGTTTTCCTTCTGATTATAACTG
LOC_Os12g09190
Target Sequence 
TTGACTATGATGTCCAGGCCGCCATTCGTATGTGGTTTCCAAAAGCCAAATCAGGTAAGAGGAAGAACTAAGGAAAAGGC
TAAAGGAANCTNGTAGNGTGGATGATATACCTGATGCTATATAGTTATATAGGGGTCGACCTATGTTTTGTTTCAGAAGT
TTGGTTAGATGGAGTCCGCTTAGATGGTTTTGAAACTTATGAACTCTTTTGAGGTGTAATCAGGGGATGTTGCTAACTTG
GGGGAAGCTGGCTTATGAGTCTCTTAGGCTTTCTCAACTTGTTGTCAATTATGTTGGAATTCAGGTGGATGATATACCTG
ATGCTATATAGTTATATAGGNNTNGANCCNNTATTTTGTTTCAGAAGTTCGGTTAGATGAAGTCTTCTTAGATGGTTTTG
AACTTATGAACTCTTTTANANGTNTAATCAGGGGACGTTGCTAACTTTTGGGGAAGCNCAATGCTTATGAGTCTCTCAGG
CTTTCTCAACTTGTCAATTATGTTGGAATTCAGGTGGTTTTCCTTCTGATTATAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23820.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis