Browse Element(s) Details


Os.49901.1.S1_at

Description gb:AK119313.1
DB_XREF= gi:37988936
TID=Os.49901.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G10, full insert sequence.
FL= gb:AK119313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0921011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein
LOC_Os12g09150NANA12+4786617..4787184retrotransposon protein, putative, unclassified
LOC_Os12g09164OsAffx.16205.1.S1_at2/1112+4789962..4793210hypothetical protein
LOC_Os12g09164OsAffx.25292.1.S1_at1/1112+4789962..4793210hypothetical protein
LOC_Os12g09180NANA12+4793546..4793836hypothetical protein
LOC_Os12g09190Os.23820.1.A1_at11/1112+4795465..4799050expressed protein
LOC_Os12g09200NANA12+4801307..4803874retrotransposon protein, putative, unclassified
LOC_Os12g09210Os.49901.1.S1_at11/1112+4806482..4809275retrotransposon protein, putative, unclassified, expressed
LOC_Os12g09220Os.55701.1.S1_at11/1112+4813524..4817470expressed protein
LOC_Os12g09230OsAffx.21870.2.S1_x_at5/1112+4830887..4832803hypothetical protein
LOC_Os12g09230OsAffx.21870.3.S1_x_at3/1112+4830887..4832803hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49901.1.S1_at--720--10411Chr12:4807034..4807058 (25 bp)
TTATCTACAGCTCGACATGGGCGGA
LOC_Os12g09210
Os.49901.1.S1_at--139--1971Chr12:4806990..4807014 (25 bp)
ACTGTCTTCCAGACGTTGCAGGATG
LOC_Os12g09210
Os.49901.1.S1_at--463--7991Chr12:4806970..4806994 (25 bp)
GGATGATCACCTCCATTTGAAGCGC
LOC_Os12g09210
Os.49901.1.S1_at--363--8851Chr12:4806899..4806923 (25 bp)
TGATCTCTAGCGATGGTGTCGCCAT
LOC_Os12g09210
Os.49901.1.S1_at--907--8471Chr12:4806734..4806758 (25 bp)
TGGCGACGGCATTCAGCGAGCTGCA
LOC_Os12g09210
Os.49901.1.S1_at--746--9671Chr12:4806668..4806692 (25 bp)
TCACCACCAATTTCATCGTCGAATG
LOC_Os12g09210
Os.49901.1.S1_at--413--3231Chr12:4806635..4806659 (25 bp)
CAAGATCTGAGTTTGGCGCGGTGCT
LOC_Os12g09210
Os.49901.1.S1_at--121--7571Chr12:4806597..4806621 (25 bp)
GGGCCGGTAGCGTTCTTCAGCAAAC
LOC_Os12g09210
Os.49901.1.S1_at--316--611Chr12:4806557..4806581 (25 bp)
ATGCGAAGCTCGCTGCATACGAACG
LOC_Os12g09210
Os.49901.1.S1_at--806--10331Chr12:4806524..4806548 (25 bp)
TTAGCTTAGTACAGGCGGTCAGGCA
LOC_Os12g09210
Os.49901.1.S1_at--411--3491Chr12:4806505..4806529 (25 bp)
CAGGCATTGAAGACCCTATCTCTGG
LOC_Os12g09210
Target Sequence 
TTATCTACAGCTCGACATGGGCGGAACACCTGCGGCACGTGCGCACTGTCTTCCAGACGTTGCAGGATGATCACCTCCAT
TTGAAGCGCTCCAAATGTGAGTTCGGGCTGACCGCCGTATCCTACCTGGGCCACCTGATCTCTAGCGATGGTGTCGCCAT
GGACCAGCACAAGATCTAGGCCGTCCTCAGCTTCCTCGGCTTGGCGGGCTACTACCGCCGTTTCATCCGCAACTTCGGCA
CCATCGCGGCGCCCTTGATGGCCCTGCTCCGCAAGGAGGGCTTTCACTGGAATGAGGCGGTGGCGACGGCATTCAGCGAG
CTGCAACACGCCCTGACGGCCGCACCGGTGCTCCAGTTGCCGGACCTCACCACCAATTTCATCGTCGAATGTGACGCATC
AAGATCTGAGTTTGGCGCGGTGCTTCATCAAGGTGGCGGGCCGGTAGCGTTCTTCAGCAAACCCATCGTGCGCCGCCATG
CGAAGCTCGCTGCATACGAACGCGAGCTCATTAGCTTAGTACAGGCGGTCAGGCATTGAAGACCCTATCTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis