Browse Element(s) Details


OsAffx.21870.2.S1_x_at

Description tigr:9635.m04101
TID=OsAffx.21870.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4471011/11hypothetical protein
LOC_Os05g4469011/11hypothetical protein
LOC_Os01g5937011/11hypothetical protein
LOC_Os01g5939011/11hypothetical protein
LOC_Os07g4101411/11Glycosyl hydrolases family 17 protein
LOC_Os02g022108/11aminotransferase, class III family protein, expressed
LOC_Os03g048205/11hypothetical protein
LOC_Os12g092305/11hypothetical protein
LOC_Os12g076204/11hypothetical protein
LOC_Os02g092803/11hypothetical protein
LOC_Os03g256903/11hypothetical protein
LOC_Os04g483201/11hypothetical protein
LOC_Os07g425501/11hypothetical protein
LOC_Os01g066501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44650NANA5+25888188..25888853hypothetical protein
LOC_Os05g44660NANA5+25889971..25891914retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44670OsAffx.20354.1.S1_at1/115+25892744..25894283retrotransposon protein, putative, unclassified
LOC_Os05g44680NANA5+25897860..25898843retrotransposon protein, putative, unclassified
LOC_Os05g44690OsAffx.21870.2.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44690OsAffx.21870.3.S1_x_at11/115+25903738..25905076hypothetical protein
LOC_Os05g44700NANA5+25906259..25907928retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44710OsAffx.21870.3.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44710OsAffx.21870.2.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21870.2.S1_x_at--833--39314Chr05:25911549..25911573 (25 bp)
CGGCGTCAGCGGCTCTGCCTTTTGA
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--1141--61910Chr05:25911592..25911616 (25 bp)
GAGGCAGGGAGCTCGCTACCCGGGA
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--254--58710Chr05:25911689..25911713 (25 bp)
GAGCCGCGCCTCACGGTTTTGGATG
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--357--9699Chr05:25911699..25911723 (25 bp)
TCACGGTTTTGGATGCATGCGGCAT
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--276--58110Chr05:25911746..25911770 (25 bp)
GACGCCGGCGACGACTGCAAAAGGA
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--196--8377Chr05:25911833..25912155 (25 bp)
GGCGATGGCGGCACCCAGGGTTCAA
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--929--18115Chr08:23396727..23396747 (21 bp)
ACCCAGGGTTCAAGGTGGATCCAAG
NONE
OsAffx.21870.2.S1_x_at--212--4576Chr05:25912194..25912218 (25 bp)
GCGGGAATTTTGGTATTCTTGGGAT
LOC_Os05g44710
OsAffx.21870.2.S1_x_at--672--76312Chr08:23396794..23396818 (25 bp)
GGGATGGATTTATATTTGGCGGCAC
NONE
OsAffx.21870.2.S1_x_at--52--102318Chr08:23396808..23396832 (25 bp)
TTTGGCGGCACGAAGGATTATTTCA
NONE
OsAffx.21870.2.S1_x_at--953--26519Chr08:23396820..23396844 (25 bp)
AAGGATTATTTCAGAGGATTTCAAA
NONE
Target Sequence 
CGGCGTCAGCGGCTCTGCCTTTTGAACAAGAAGCCAAGGAGTGGAGGCAGGGAGCTCGCTACCCGGGAGGGGAAAAAGCG
AAAGGAGGAGGAGGANNNAAGGGAGCTTTGCTCCTTCCGNTTTGGGAGGAAAGGGATGAGANCGAGCCGCGCCTCACGGT
TTTGGATGCATGCGGCATGGGGCGCCGGGCCCGNGAGGATGACGCCGGCGACGACTGCAAAAGGACGGGGACGGTTTGAA
GGCAAGCGCGGACACGGTGGTCGTCGGGGCAGGCGACGACCGAGGGTGGCGATGGCGGCACCCAGGGTTCAAGGTGGATC
CAAGGGAGGGGTCAAGGAAGGGCTTCAAAAGCGGGAATTTTGGTATTCTTGGGATGGATTTATATTTGGCGGCACGAAGG
ATTATTTCAGAGGATTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21870.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis