Browse Element(s) Details


OsAffx.12505.1.S1_x_at

Description gb:NM_190052.1
DB_XREF= gi:34907187
GEN=P0423A12.33
TID=OsAffx.12505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0423A12.33 (P0423A12.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g323642/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g447401/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12505.1.S1_x_at--529--3471Chr01:41368842..41368863 (22 bp)
CAGGGCAAGGGCACATGTGTCGCCT
NONE
OsAffx.12505.1.S1_x_at--606--5171NONE
GCAAGGGCACATGTGTCGCCTAGGC
NONE
OsAffx.12505.1.S1_x_at--1129--3211NONE
CAAGGGCACATGTGTCGCCTAGGCC
NONE
OsAffx.12505.1.S1_x_at--1075--2871NONE
AAGGGCACATGTGTCGCCTAGGCCA
NONE
OsAffx.12505.1.S1_x_at--1157--1071NONE
AGGGCACATGTGTCGCCTAGGCCAG
NONE
OsAffx.12505.1.S1_x_at--849--2111NONE
ACATGTGTCGCCTAGGCCAGGGAGT
NONE
OsAffx.12505.1.S1_x_at--1118--771NONE
ATGTGTCGCCTAGGCCAGGGAGTGG
NONE
OsAffx.12505.1.S1_x_at--870--100710Chr11:12084533..12084553 (21 bp)
TAGGCCAGGGAGTGGCCGCCGCCCT
NONE
OsAffx.12505.1.S1_x_at--157--43739Chr09:18592991..18593015 (25 bp)
CCACGTGGCATTGGAGGGCAGCCTC
NONE
OsAffx.12505.1.S1_x_at--544--92129Chr12:10410249..10410272 (24 bp)
TCCAATCTCTGGGAAGGAGTGGCCG
NONE
OsAffx.12505.1.S1_x_at--302--31927Chr10:17042028..17042143 (25 bp)
CAATCTCTGGGAAGGAGTGGCCGCC
NONE
Target Sequence 
CAGGGCAAGGGCACATGTGTCGCCTAGGCCAGGGAGTGGCCGCCGCCCTACCTCAGGCCCGACCCCCCTCGGGGAGGGCC
ACGTGGCATTGGAGGGCAGCCTCCTCCATCCAATCTCTGGGAAGGAGTGGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12505.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis