Browse Element(s) Details


Os.5593.1.S1_at

Description gb:NM_193733.1
DB_XREF= gi:34914549
GEN=P0455H0310.3
TID=Os.5593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.3 (P0455H0310.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0455H0310.3 (P0455H0310.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g323807/11expressed protein
LOC_Os01g323892/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5593.1.S1_at--190--4531Chr01:18094881..18094905 (25 bp)
GCCGCCGTCGGGTAACATCAAGGCG
LOC_Os01g32380
Os.5593.1.S1_at--148--6611Chr01:18095035..18095059 (25 bp)
GATTGTGTCGCGACCAAGCGGACGA
LOC_Os01g32380
Os.5593.1.S1_at--924--3411Chr01:18095074..18095098 (25 bp)
CAGAAGAAGCAGGATCGCCAGCAGC
LOC_Os01g32380
Os.5593.1.S1_at--350--4731Chr01:18095097..18095121 (25 bp)
GCTGTGGCGGCCGACGTTTGTAATG
LOC_Os01g32380
Os.5593.1.S1_at--592--10631Chr01:18095128..18095152 (25 bp)
TTCGCGTTCGAGTTGAAGGGAAGCC
LOC_Os01g32380
Os.5593.1.S1_at--840--8171Chr01:18095146..18095170 (25 bp)
GGAAGCCAAGTAGTCCAACCGGAGA
LOC_Os01g32380
Os.5593.1.S1_at--283--3211Chr01:18095152..18095175 (24 bp)
CAAGTAGTCCAACCGGAGAAGAAGT
LOC_Os01g32380
Os.5593.1.S1_at--125--10331Chr01:18097298..18097322 (25 bp)
TTTCTTCTCCTCAACTGTGTCACCG
NONE
Os.5593.1.S1_at--170--10551Chr01:18097393..18097417 (25 bp)
TTCATACTGCTGCTGGCCTGCCGCA
NONE
Os.5593.1.S1_at--327--10651Chr01:18097472..18097496 (25 bp)
TTCGCCACTGCCCAGGTGATACAGT
LOC_Os01g32389
Os.5593.1.S1_at--355--9171Chr01:18097480..18097504 (25 bp)
TGCCCAGGTGATACAGTTGCAGGGA
LOC_Os01g32389
Target Sequence 
GCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGG
ACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGT
GTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAAT
GGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGTCGCCGCCGCCGTTTCTTCTCCTCA
ACTGTGTCACCGCCGCCAATCTACTCCAGTTCCCCGCCGCTCCGCGCCTCCGCCTCCGTAGCAAGCTCGCCACCTCCGCC
TCTTCATACTGCTGCTGGCCTGCCGCAGTCCACCGCCTCCTCACCATGGTCTCCCTCAGCCTGCCCGCCGTCCTCCTCAC
CTTCGCCACTGCCCAGGTGATACAGTTGCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis