Browse Element(s) Details


OsAffx.12505.2.S1_at

Description gb:XM_354261.1
DB_XREF= gi:35189955
TID=OsAffx.12505.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g323644/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os05g447403/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12505.2.S1_at--818--81537Chr12:10413192..10413216 (25 bp)
GGAAACGGGAGCCTTGCTTTGACCA
NONE
OsAffx.12505.2.S1_at--400--58740Chr12:10413200..10413224 (25 bp)
GAGCCTTGCTTTGACCAGAGCGGGA
NONE
OsAffx.12505.2.S1_at--1133--89150Chr12:18042655..18042679 (25 bp)
TGACCAGAGCGGGAGGACCGACTCC
NONE
OsAffx.12505.2.S1_at--515--17963Chr12:12971727..12971751 (25 bp)
ACCGACTCCGGCTGGGATAAGAGGA
NONE
OsAffx.12505.2.S1_at--636--59759Chr12:18042697..18042721 (25 bp)
GAGAACCTCTCACCATCATTATTTG
NONE
OsAffx.12505.2.S1_at--697--38525Chr09:18592630..18592654 (25 bp)
CTGACACACGCGATGGTGCGCCTGA
NONE
OsAffx.12505.2.S1_at--1019--40512Chr09:18592640..18592664 (25 bp)
CGATGGTGCGCCTGACATCTTGGGT
NONE
OsAffx.12505.2.S1_at--469--4315Chr10:9897006..9897484 (25 bp)
ATCTTGGGTCCCATCAGTCATTCGA
NONE
OsAffx.12505.2.S1_at--1133--3928Chr10:9897472..9897507 (25 bp)
ATCAGTCATTCGACCGGTCACAGAC
NONE
OsAffx.12505.2.S1_at--844--60925Chr08:7453487..7453511 (25 bp)
GAGTGCACTGCACACCGCATTAAAT
NONE
OsAffx.12505.2.S1_at--88--40925Chr09:18592734..18592758 (25 bp)
CGACCGCTCGGGACGCCATAAATGC
NONE
Target Sequence 
GGAAACGGGAGCCTTGCTTTGACCAGAGCGGGAGGACCGACTCCGGCTGGGATAAGAGGATGAGAACCTCTCACCATCAT
TATTTGATGGGATATGTCGGGCTGCATGTCGCCTGACACACGCGATGGTGCGCCTGACATCTTGGGTCCCATCAGTCATT
CGACCGGTCACAGACCNGTTGAGTGCACTGCACACCGCATTAAATGCGGCGTGGCNCGACCGCTCGGGACGCCATAAATG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12505.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis