Browse Element(s) Details


Os.10122.1.S1_at

Description gb:AK060145.1
DB_XREF= gi:32970163
TID=Os.10122.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0094H06.16 (OSJNBa0094H06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A06, full insert sequence.
FL= gb:AK060145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3233011/11farnesylated protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030001biological_processmetal ion transport
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10122.1.S1_at--473--6151Chr01:18068619..18068643 (25 bp)
GAGGTCCGCTACATGACCATGTTCA
LOC_Os01g32330
Os.10122.1.S1_at--591--8411Chr01:18068726..18068750 (25 bp)
GGCCGGCAACATGCTTGCTTAATTA
LOC_Os01g32330
Os.10122.1.S1_at--663--1551Chr01:18068754..18068778 (25 bp)
AGCTTGCTTGGTTGATGTGTACTAC
LOC_Os01g32330
Os.10122.1.S1_at--749--7431Chr01:18068770..18068794 (25 bp)
GTGTACTACTGCGTTAAGCCTGCAT
LOC_Os01g32330
Os.10122.1.S1_at--136--6311Chr01:18068798..18068822 (25 bp)
GATGAGGTGTCTAGCTACTGTGTAT
LOC_Os01g32330
Os.10122.1.S1_at--654--1371Chr01:18068903..18068927 (25 bp)
AGAGCTGTGGCTACGTGTTCTGAAT
LOC_Os01g32330
Os.10122.1.S1_at--215--10851Chr01:18068976..18069000 (25 bp)
TTGGTCTTTTTTGGAGCGGTAGCTA
LOC_Os01g32330
Os.10122.1.S1_at--933--2611Chr01:18069044..18069068 (25 bp)
AACCGCTAGGTAAGCTCTCTATGAT
LOC_Os01g32330
Os.10122.1.S1_at--1095--2391Chr01:18069079..18069103 (25 bp)
AAAAATCCCTGTCAGTGTCATGTAC
LOC_Os01g32330
Os.10122.1.S1_at--542--8731Chr01:18069094..18069118 (25 bp)
TGTCATGTACTGTGTGGCCTTCTAC
LOC_Os01g32330
Os.10122.1.S1_at--574--4311Chr01:18069111..18069135 (25 bp)
CCTTCTACCTAATCACATCTTTTGT
LOC_Os01g32330
Target Sequence 
GAGGTCCGCTACATGACCATGTTCAGCGACGAGAACGTCGACTCCTGCTCCATCATGTAAAACCAATAATCCATATATAT
ACTACAACTCCGGCGACTTCTCCGGCCGGCCGGCAACATGCTTGCTTAATTAGCTAGCTTGCTTGGTTGATGTGTACTAC
TGCGTTAAGCCTGCATAGAGATGAGGTGTCTAGCTACTGTGTATATTATGGCCATATGTTATGTAGTACTACGTGCTTTG
TTTTGGATTATTACTAAAATAGTTGCATAAAGAGAGTGAAAGCTAGAGCTGTGGCTACGTGTTCTGAATTGTGATTACGT
GTACGAACTAGAAACGACACGTCTGTTGTCGATTGAATTGGTCTTTTTTGGAGCGGTAGCTAGGCCGGGTGAAGGGGCGG
GGTTAATCAATCAATTGTTTGGTTGAACCGCTAGGTAAGCTCTCTATGATGATATGAATAAAAAATCCCTGTCAGTGTCA
TGTACTGTGTGGCCTTCTACCTAATCACATCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis