Browse Element(s) Details


Os.23178.1.S1_at

Description gb:AK102473.1
DB_XREF= gi:32987682
TID=Os.23178.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent Clp protease (OSJNBa0094H06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094H09, full insert sequence.
FL= gb:AK102473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3235011/11ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23178.1.S1_at--286--5251Chr01:18078130..18078154 (25 bp)
GAATCACCGGGAAGCCTGAAGAGCA
LOC_Os01g32350
Os.23178.1.S1_at--948--171Chr01:18078266..18078290 (25 bp)
ATTTCATGAGTCCTTGGGAAGCCAA
LOC_Os01g32350
Os.23178.1.S1_at--481--8691Chr01:18078360..18078384 (25 bp)
TGTGCCACCTCCAAAATCGCGTGTG
LOC_Os01g32350
Os.23178.1.S1_at--176--3051Chr01:18078374..18078398 (25 bp)
AATCGCGTGTGTGGTACTTATGGAA
LOC_Os01g32350
Os.23178.1.S1_at--210--8211Chr01:18078395..18078419 (25 bp)
GGAATGCTTCAGGACCAACTAGAAA
LOC_Os01g32350
Os.23178.1.S1_at--892--5391Chr01:18078637..18078661 (25 bp)
GAAGCTTAATGTAGTCTGGCAGTAG
LOC_Os01g32350
Os.23178.1.S1_at--719--751Chr01:18078672..18078696 (25 bp)
ATGTCAAGTAGCTGTAGCGCTCCTT
LOC_Os01g32350
Os.23178.1.S1_at--757--1611Chr01:18078681..18078705 (25 bp)
AGCTGTAGCGCTCCTTAATTTTATG
LOC_Os01g32350
Os.23178.1.S1_at--1071--651Chr01:18078729..18078753 (25 bp)
ATGCAATAACTCATGGCGATTTCCA
LOC_Os01g32350
Os.23178.1.S1_at--306--8371Chr01:18078743..18078767 (25 bp)
GGCGATTTCCAGTGTACATTGCTTT
LOC_Os01g32350
Os.23178.1.S1_at--111--7031Chr01:18078756..18078780 (25 bp)
GTACATTGCTTTCATTCTGCCATTA
LOC_Os01g32350
Target Sequence 
GAATCACCGGGAAGCCTGAAGAGCAGATTGATGAGGATACAAAGTTTGACTATTTCATGAGTCCTTGGGAAGCCAAGGAT
TATGGCATAGTTGACAGCGTTATAGATGAAGGGAAGCCGGGGTTGGTTGCTCCTTTGGCAGGAGCTGTGCCACCTCCAAA
ATCGCGTGTGTGGTACTTATGGAATGCTTCAGGACCAACTAGAAAAATCATGAAAAATCTACCTTCAGAGGAGAAGCTTA
TTCAAAATGGTAATGGCAGTGCAAGTGGAGACGATGGGAAGTTCAAGGAGATCTCAACAGCTTGAGGTTATTACACATTG
TGAAGCTTAATGTAGTCTGGCAGTAGTAGAAAAAGAATGTCAAGTAGCTGTAGCGCTCCTTAATTTTATGGACTGCAAGA
ACACGTTCTTCCAATGCAATAACTCATGGCGATTTCCAGTGTACATTGCTTTCATTCTGCCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis