Browse Element(s) Details


Os.46370.1.A1_x_at

Description gb:CB966906
DB_XREF= gi:30229015
DB_XREF=NL44_E11
CLONE=NL44_E11
TID=Os.46370.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46370 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g323641/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g32330Os.10122.1.S1_at11/111+18067906..18069143farnesylated protein 2, putative, expressed
LOC_Os01g32350Os.23178.1.S1_at11/111+18073209..18078936ATP-dependent Clp protease proteolytic subunit 1, putative, expressed
LOC_Os01g32364Os.35044.2.S1_x_at11/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.2.S1_at4/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364OsAffx.12505.1.S1_x_at2/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32364Os.46370.1.A1_x_at1/111+18082961..18091697Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g32380Os.5593.1.S1_at7/111+18094741..18095368expressed protein
LOC_Os01g32389Os.5593.1.S1_at2/111+18097436..18098714NA
LOC_Os01g32389OsAffx.6232.1.S1_s_at1/111+18097436..18098714NA
LOC_Os01g32400OsAffx.21171.5.S1_at5/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32400OsAffx.21171.5.S1_x_at3/111+18102207..18104199retrotransposon protein, putative, unclassified
LOC_Os01g32410OsAffx.940.1.S1_x_at1/111+18105474..18107011retrotransposon protein, putative, unclassified
LOC_Os01g32420OsAffx.22711.4.A1_x_at2/111+18109885..18110625retrotransposon protein, putative, unclassified
LOC_Os01g32430OsAffx.2132.2.S1_s_at11/111+18116600..18117148hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46370.1.A1_x_at--257--4731NONE
GCTGGGCTTTCAACCCTTGATATAA
NONE
Os.46370.1.A1_x_at--308--10391NONE
TTTTCGTTTGCCAAAATGCACACAA
NONE
Os.46370.1.A1_x_at--591--9391NONE
TCGTTTGCCAAAATGCACACAATAA
NONE
Os.46370.1.A1_x_at--1039--4391NONE
GCCAAAATGCACACAATAAGAAGGT
NONE
Os.46370.1.A1_x_at--610--2891NONE
AAGGTGGGCCCAATGAGTAGCTAAT
NONE
Os.46370.1.A1_x_at--537--7111Chr01:18091660..18091684 (25 bp)
GTCATGAAAATAGTTTGAATGGTTC
LOC_Os01g32364
Os.46370.1.A1_x_at--522--7631NONE
GGGAGATACCCATTAAAGATTGATG
NONE
Os.46370.1.A1_x_at--517--9691NONE
TAATAAGGGTAGTCTCAACCCCTAG
NONE
Os.46370.1.A1_x_at--108--11NONE
ATAAGGGTAGTCTCAACCCCTAGTG
NONE
Os.46370.1.A1_x_at--238--2871NONE
AAGGGTAGTCTCAACCCCTAGTGTG
NONE
Os.46370.1.A1_x_at--351--751NONE
ATGTCCATAAAACATCACCAATAGA
NONE
Target Sequence 
GCTGGGCTTTCAACCCTTGATATAACCCCCTTTTCGTTTGCCAAAATGCACACAATAAGAAGGTGGGCCCAATGAGTAGC
TAATAAATACCAGTAGGGTTTTTAACCATCTTGAATGATGTCATGAAAATAGTTTGAATGGTTCATGGGGAGATACCCAT
TAAAGATTGATGGAGTGGAGTAATAAGGGTAGTCTCAACCCCTAGTGTGCATAAGTAGTGTCTAAGGTGTCATGTCCATA
AAACATCACCAATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46370.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis