Browse Element(s) Details


Os.20973.1.S1_s_at

Description gb:BQ907247
DB_XREF= gi:22306025
DB_XREF=N005H11
CLONE=N005H11
TID=Os.20973.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20973 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4476011/11Hexokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44710OsAffx.21870.3.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44710OsAffx.21870.2.S1_x_at11/115+25910994..25914096hypothetical protein
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44770Os.10619.1.S1_at11/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.10619.1.S2_at6/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.11775.2.S1_x_at1/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44780Os.53939.1.S1_at11/115+25944983..25948154expressed protein
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20973.1.S1_s_at--747--2571Chr05:25938896..25938920 (25 bp)
AACGTTGGATGGCAGTAGCAGACTA
LOC_Os05g44760
Os.20973.1.S1_s_at--1096--6611Chr05:25938899..25938923 (25 bp)
GTTGGATGGCAGTAGCAGACTAACA
LOC_Os05g44760
Os.20973.1.S1_s_at--235--8271Chr05:25938906..25938930 (25 bp)
GGCAGTAGCAGACTAACAGGGAAAT
LOC_Os05g44760
Os.20973.1.S1_s_at--508--5691Chr05:25938916..25938940 (25 bp)
GACTAACAGGGAAATGGAGGCACAG
LOC_Os05g44760
Os.20973.1.S1_s_at--105--3191Chr05:25938942..25938966 (25 bp)
CAATTTCCATTCCTGTTCTGTCAGA
LOC_Os05g44760
Os.20973.1.S1_s_at--252--211Chr05:25938944..25938968 (25 bp)
ATTTCCATTCCTGTTCTGTCAGATT
LOC_Os05g44760
Os.20973.1.S1_s_at--8--9251Chr05:25938947..25938971 (25 bp)
TCCATTCCTGTTCTGTCAGATTCTT
LOC_Os05g44760
Os.20973.1.S1_s_at--943--9291Chr05:25938973..25938997 (25 bp)
TCCCCCTTAATTGATGTTGAGAACC
LOC_Os05g44760
Os.20973.1.S1_s_at--592--9091Chr05:25939008..25939032 (25 bp)
TGCTCTGTATTTTCTCTTCGTAATA
LOC_Os05g44760
Os.20973.1.S1_s_at--857--4791Chr05:25939009..25939033 (25 bp)
GCTCTGTATTTTCTCTTCGTAATAA
LOC_Os05g44760
Os.20973.1.S1_s_at--620--3871Chr05:25939012..25939036 (25 bp)
CTGTATTTTCTCTTCGTAATAAAGA
LOC_Os05g44760
Target Sequence 
AACGTTGGATGGCAGTAGCAGACTAACAGGGAAATGGAGGCACAGGCCAATTTCCATTCCTGTTCTGTCAGATTCTTNTT
CCCCCTTAATTGATGTTGAGAACCCAGATTTTTTTGCTCTGTATTTTCTCTTCGTAATAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20973.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis