Browse Element(s) Details


OsAffx.31479.5.S1_x_at

Description tigr:9633.m00124
TID=OsAffx.31479.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KED
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3831011/11hypothetical protein
LOC_Os05g0208011/11hypothetical protein
LOC_Os11g448409/11hypothetical protein
LOC_Os05g447929/11hypothetical protein
LOC_Os11g411808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein
LOC_Os11g38320Os.20602.2.S1_x_at11/1111+22193303..22195477hAT family dimerisation domain containing protein
LOC_Os11g38330Os.6094.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330Os.6094.2.A1_s_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.7337.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.766.1.S1_at3/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_s_at1/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_at1/1111+22196370..22202867expressed protein
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31479.5.S1_x_at--1084--8179Chr11:24187534..24187558 (25 bp)
GGAACCATACATTACCGATTTTGAT
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--960--5515Chr11:24187571..24187595 (25 bp)
GAAAAGGCAATTACAATCGATGATG
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--1162--7015Chr11:24187659..24187683 (25 bp)
GTACAAAGACGAATCCTTCTAAAAG
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--179--8195Chr11:24187933..24187957 (25 bp)
GGAACCATATACTACTGATTGTGAG
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--1140--5115Chr11:24187964..24187988 (25 bp)
GCAAATGACAAACCAATTTCGCTTG
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--422--2655Chr11:24187974..24187998 (25 bp)
AACCAATTTCGCTTGATGATGATTT
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--117--7035Chr11:24188192..24188216 (25 bp)
GTACAAATATGGGAACTTGCACAAA
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--835--7334Chr05:596784..596808 (25 bp)
GTGCATGACGGAAAAATTGCTTCAG
LOC_Os05g02080
OsAffx.31479.5.S1_x_at--840--8155Chr11:24188356..24188380 (25 bp)
GGAACTGCTAAAAGACCATCAAGGA
LOC_Os11g41180
OsAffx.31479.5.S1_x_at--50--7035Chr11:24188748..24188772 (25 bp)
GTAATTTATCGTCAAGAAGGCCCAA
NONE
OsAffx.31479.5.S1_x_at--976--7075Chr11:24188758..24188782 (25 bp)
GTCAAGAAGGCCCAAAAGAACCAAT
NONE
Target Sequence 
GGAACCATACATTACCGATTTTGATGGGAAAACAAATGAAAAGGCAATTACAATCGATGATGATTGTGAAGAATCACTTG
ATGATTATTTTGATGAAGAATACAATGAAAAGGTTACACAGGAGAGTACAAAGACGAATCCTTCTAAAAGAAGAGTTACA
AGATGTTTTAAAACATCTAACAAGGCTAAGAAAGGAAAATGTTCTGAAATGAAAACTCAGAGAAATAAGGAACCATATAC
TACTGATTGTGAGAAGATAGCAAATGACAAACCAATTTCGCTTGATGATGATTTTGATGAAGAATATAATAAAAATATGG
TAAGGGGAAAAGGTTGTGGAAAGAAGAGTACAAATATGGGAACTTGCACAAAAAGTGCAATTGAAAATACAATTCAAGAT
GATGAAGTGCATGACGGAAAAATTGCTTCAGGAACTGCTAAAAGACCATCAAGGAAATTTATAATTTCAGATAGTGAGGT
AATTTATCGTCAAGAAGGCCCAAAAGAACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31479.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis