Browse Element(s) Details


OsAffx.31362.1.S1_at

Description tigr:9639.m03473
TID=OsAffx.31362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein
LOC_Os11g38290OsAffx.31422.1.S1_at10/1111+22169887..22171204hypothetical protein
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31362.1.S1_at--864--4751Chr11:22163598..22163622 (25 bp)
GCTGCTTGTTGCTCCGGTGCATGGA
LOC_Os11g38270
OsAffx.31362.1.S1_at--722--10791Chr11:22163593..22163617 (25 bp)
TTGTTGCTCCGGTGCATGGACGTGT
LOC_Os11g38270
OsAffx.31362.1.S1_at--411--3811Chr11:22163590..22163611 (22 bp)
CTCCGGTGCATGGACGTGTTGGCTT
LOC_Os11g38270
OsAffx.31362.1.S1_at--528--1911Chr11:22163436..22163598 (25 bp)
ACGTGTTGGCTTGCCCGGTGAGTTT
LOC_Os11g38270
OsAffx.31362.1.S1_at--979--7311Chr11:22163430..22163453 (24 bp)
TGGCTTGCCCGGTGAGTTTAGTGGT
LOC_Os11g38270
OsAffx.31362.1.S1_at--64--9791Chr11:22163413..22163437 (25 bp)
TTAGTGGTGACCAGAGGCCAGTCCC
LOC_Os11g38270
OsAffx.31362.1.S1_at--454--8931Chr11:22163406..22163430 (25 bp)
TGACCAGAGGCCAGTCCCGGCGACA
LOC_Os11g38270
OsAffx.31362.1.S1_at--1144--751Chr11:22163394..22163418 (25 bp)
AGTCCCGGCGACATCTTTTGATCTC
LOC_Os11g38270
OsAffx.31362.1.S1_at--289--8391Chr11:22163388..22163412 (25 bp)
GGCGACATCTTTTGATCTCGTGACA
LOC_Os11g38270
OsAffx.31362.1.S1_at--327--5671Chr11:22163385..22163409 (25 bp)
GACATCTTTTGATCTCGTGACAGAG
LOC_Os11g38270
OsAffx.31362.1.S1_at--381--3671Chr11:22163384..22163404 (21 bp)
CTTTTGATCTCGTGACAGAGGAAAA
LOC_Os11g38270
Target Sequence 
GCTGCTTGTTGCTCCGGTGCATGGACGTGTTGGCTTGCCCGGTGAGTTTAGTGGTGACCAGAGGCCAGTCCCGGCGACAT
CTTTTGATCTCGTGACAGAGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis