Browse Element(s) Details


Os.23172.1.S1_x_at

Description gb:CF321411
DB_XREF= gi:33693172
DB_XREF=HD--12-K13.g1
CLONE=HD--12-K13
TID=Os.23172.1
CNT=24
FEA=mRNA
TIER=Stack
STK=11
UG=Os.23172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome3, At3g50430 (P0022B05.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0294011/11expressed protein
LOC_Os07g028504/11expressed protein
LOC_Os07g029203/11expressed protein
LOC_Os07g026903/11expressed protein
LOC_Os07g029003/11hypothetical protein
LOC_Os07g027002/11hypothetical protein
LOC_Os07g028701/11hypothetical protein
LOC_Os11g382101/11expressed protein
LOC_Os07g324201/11Bromodomain containing protein, expressed
LOC_Os07g028801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23172.1.S1_x_at--479--511Chr07:1093920..1093944 (25 bp)
ATCGTCAGTGGAGACGGCGTCAGCA
LOC_Os07g02940
Os.23172.1.S1_x_at--545--1098Chr07:1065535..1065559 (25 bp)
AGGGCCTCCTGCCATTGGAGGACAT
LOC_Os07g02850
Os.23172.1.S1_x_at--1106--6071Chr07:1093824..1093848 (25 bp)
GAGTTTGGCTACAACAAGGAAACAG
LOC_Os07g02940
Os.23172.1.S1_x_at--650--952Chr07:1065580..1065604 (25 bp)
AGGAAACAGGATTCATGTGGCTGGT
LOC_Os07g02850
Os.23172.1.S1_x_at--717--8196Chr07:1065610..1065634 (25 bp)
GGAAGAAGAAGATCGAGCACACCTT
LOC_Os07g02850
Os.23172.1.S1_x_at--82--2816Chr11:22148483..22148687 (25 bp)
AAGATCGAGCACACCTTCAAGAAGA
LOC_Os11g38210
Os.23172.1.S1_x_at--485--5471Chr07:1093530..1093554 (25 bp)
GAACTAAGGTCTAATGAGTCGGCTA
LOC_Os07g02940
Os.23172.1.S1_x_at--1139--2931Chr07:1093482..1093506 (25 bp)
AAGGCTTAAAGCCACTTTCTTACAT
LOC_Os07g02940
Os.23172.1.S1_x_at--878--1691Chr07:1093473..1093497 (25 bp)
AGCCACTTTCTTACATCACCATGTA
LOC_Os07g02940
Os.23172.1.S1_x_at--47--6651Chr07:1093446..1093470 (25 bp)
GTTGTATCTCTGTATTGCAAACACA
LOC_Os07g02940
Os.23172.1.S1_x_at--1030--452Chr07:19284903..19284952 (24 bp)
ATCTCTGTATTGCAAACACAGTCAC
LOC_Os07g32420
Target Sequence 
ATCGTCAGTGGAGACGGCGTCAGCAGGAAGAAGTCCATCGAGCTGCTGGAGGAGCTCGGCCTCCCCAAGGGCCTCCTGCC
ATTGGAGGACATCGAGGAGTTTGGCTACAACAAGGAAACAGGATTCATGTGGCTGGTGCAGAGGAAGAAGAAGATCGAGC
ACACCTTCAAGAAGATCAAGCAGACCGTCTCCTACGCCGGCGAGGTCACGGCGTTCGTCGAGAAGGGGAAGCTGAAGAAG
ATCACCGGCGTGAAGACCAAGGAGCTGCTGCTCTGGCTCAGCGTCGTCGAGGTCTACGTCGCCGATGCCTCGCCGGAGAA
GGTCACCTTCAAGACTGGAACTGGGCTCTNTGATACCTTCGATGCCACTGCTTTTGCTCTCGGGGAGTAAGAACTAAGGT
CTAATGAGTCGGCTACTCCTATCGTCTAAATTATGTAAAAGGCTTAAAGCCACTTTCTTACATCACCATGTACTGTTGTA
TCTCTGTATTGCAAACACAGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23172.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis