Browse Element(s) Details


Os.32682.1.S1_at

Description gb:AK103259.1
DB_XREF= gi:32988468
TID=Os.32682.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0022B05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124C09, full insert sequence.
FL= gb:AK103259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0296011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02870OsAffx.5189.1.S1_at11/117+1074925..1075645hypothetical protein
LOC_Os07g02870Os.23172.1.S1_x_at1/117+1074925..1075645hypothetical protein
LOC_Os07g02880Os.36607.1.S1_x_at11/117+1079262..1080033expressed protein
LOC_Os07g02880Os.23172.1.S1_x_at1/117+1079262..1080033expressed protein
LOC_Os07g02890Os.40458.1.S1_at11/117+1081104..1082724F-box domain containing protein, expressed
LOC_Os07g02900Os.23172.1.S1_x_at3/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.46022.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02900Os.40003.1.S1_x_at1/117+1084101..1084529hypothetical protein
LOC_Os07g02910Os.31486.1.S1_at11/117+1085689..1087509F-box domain containing protein, expressed
LOC_Os07g02920Os.40003.1.S1_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.40003.1.S1_x_at11/117+1087792..1088466expressed protein
LOC_Os07g02920Os.23172.1.S1_x_at3/117+1087792..1088466expressed protein
LOC_Os07g02920Os.46022.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02920Os.36607.1.S1_x_at1/117+1087792..1088466expressed protein
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32682.1.S1_at--871--1131Chr07:1103299..1103323 (25 bp)
AGTGCCCAAGGTAATGGATTGCTTC
LOC_Os07g02960
Os.32682.1.S1_at--742--8571Chr07:1103313..1103337 (25 bp)
TGGATTGCTTCGTCTGTCAACCTGA
LOC_Os07g02960
Os.32682.1.S1_at--335--131Chr07:1103349..1103373 (25 bp)
ATTCACTGTCTTTTCATTCAGTTCA
LOC_Os07g02960
Os.32682.1.S1_at--566--291Chr07:1103383..1103407 (25 bp)
ATACCTTTGTCTGATGAAGCCGCGC
LOC_Os07g02960
Os.32682.1.S1_at--997--7551Chr07:1103495..1103519 (25 bp)
GGGCGGACAGTTTAATCATGTATTA
LOC_Os07g02960
Os.32682.1.S1_at--1096--10111Chr07:1103524..1103548 (25 bp)
TATGCTTACTGAAGATGTTCCCCTT
LOC_Os07g02960
Os.32682.1.S1_at--997--8711Chr07:1103571..1103595 (25 bp)
TGTACTAGTACGAGCCAGTGTGTTT
LOC_Os07g02960
Os.32682.1.S1_at--753--10311Chr07:1103593..1103617 (25 bp)
TTTAGGTTTAGCCAAGGCCCATCTT
LOC_Os07g02960
Os.32682.1.S1_at--566--2951Chr07:1103606..1103630 (25 bp)
AAGGCCCATCTTAGTCTTGACTCTT
LOC_Os07g02960
Os.32682.1.S1_at--30--5711Chr07:1103624..1103648 (25 bp)
GACTCTTGACAAGCCAGTCTATGTT
LOC_Os07g02960
Os.32682.1.S1_at--661--131Chr07:1103650..1103674 (25 bp)
ATTAATTTCCTGTATGTTCAATGCA
LOC_Os07g02960
Target Sequence 
AGTGCCCAAGGTAATGGATTGCTTCGTCTGTCAACCTGACTTGGGGTTTTATTCACTGTCTTTTCATTCAGTTCATGGTT
ATGGATACCTTTGTCTGATGAAGCCGCGCATCCGGAGCTGCAAAACCAATTCTAGTTGCAGATCCAAGGCCAGGAGAGTA
TCAAAGACAAGACATAACTAGTGTAAGTTTTGGTAGGGGCGGACAGTTTAATCATGTATTATGTATATGCTTACTGAAGA
TGTTCCCCTTCAAATTAAAAGATGTATAATATTGTACTAGTACGAGCCAGTGTGTTTAGGTTTAGCCAAGGCCCATCTTA
GTCTTGACTCTTGACAAGCCAGTCTATGTTAATTAATTTCCTGTATGTTCAATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis