Browse Element(s) Details


OsAffx.21068.1.S1_at

Description tigr:9635.m00209
TID=OsAffx.21068.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0300011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02930NANA7+1091541..1093053F-box domain containing protein
LOC_Os07g02940Os.23172.1.S1_x_at11/117+1093357..1094206expressed protein
LOC_Os07g02940Os.46022.1.S1_x_at2/117+1093357..1094206expressed protein
LOC_Os07g02940Os.40003.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02940Os.36607.1.S1_x_at1/117+1093357..1094206expressed protein
LOC_Os07g02950Os.54108.1.S1_at11/117+1094680..1099996expressed protein
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21068.1.S1_at--144--2651Chr07:1116682..1116706 (25 bp)
AAGCCAAGTAATGTCCTCCTAGATG
LOC_Os07g03000
OsAffx.21068.1.S1_at--147--8291Chr07:1116628..1116652 (25 bp)
GGCATAGCACATTTCTACCTCAAAT
LOC_Os07g03000
OsAffx.21068.1.S1_at--930--2271Chr07:1116607..1116631 (25 bp)
AAATCCAAGTCACCTGCCGTTGGAG
LOC_Os07g03000
OsAffx.21068.1.S1_at--1088--9171Chr07:1116593..1116617 (25 bp)
TGCCGTTGGAGATTCGAGCTCAATC
LOC_Os07g03000
OsAffx.21068.1.S1_at--356--5911Chr07:1116578..1116602 (25 bp)
GAGCTCAATCTGTTCGATCGGTTTG
LOC_Os07g03000
OsAffx.21068.1.S1_at--310--1011Chr07:1116415..1116439 (25 bp)
AGGATTCCTCTCAACCTCTGGAGAT
LOC_Os07g03000
OsAffx.21068.1.S1_at--503--5511Chr07:1116349..1116373 (25 bp)
GAAAAGGCCTACTGATCCTCTGTTC
LOC_Os07g03000
OsAffx.21068.1.S1_at--673--5691Chr07:1116317..1116341 (25 bp)
GACTTAGCATCGTCAGTTTCGTCGA
LOC_Os07g03000
OsAffx.21068.1.S1_at--532--251Chr07:1116266..1116290 (25 bp)
ATATCATTGATACTTACCTCCGAAA
LOC_Os07g03000
OsAffx.21068.1.S1_at--543--8071Chr07:1116232..1116256 (25 bp)
GGAGCTTGCTCCAGCGATGTTGGAC
LOC_Os07g03000
OsAffx.21068.1.S1_at--1022--5651Chr07:1116177..1116201 (25 bp)
GACATGCTTGGAGTGGCACTTTCCT
LOC_Os07g03000
Target Sequence 
AAGCCAAGTAATGTCCTCCTAGATGATGATATGACTGCTCATTTGGGAGATTTTGGCATAGCACATTTCTACCTCAAATC
CAAGTCACCTGCCGTTGGAGATTCGAGCTCAATCTGTTCGATCGGTTTGAAAGGAACTATAGGGTATATTGCCCCANNNT
ATGCTGGAGGAGGATTCCTCTCAACCTCTGGAGATGTATACAGCTTTGGCGTAGTACTATTGGAGTTGCTAACAGGGAAA
AGGCCTACTGATCCTCTGTTCTGCAATGGACTTAGCATCGTCAGTTTCGTCGAGAGGAACTATCCAGATGTGATAGATCA
TATCATTGATACTTACCTCCGAAAAGATCTCAAGGAGCTTGCTCCAGCGATGTTGGACGAAGAGAAGGCAGCATACCAGT
TGCTGTTGGACATGCTTGGAGTGGCACTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis