Browse Element(s) Details


OsAffx.5190.1.S1_at

Description tigr:9635.m00210
TID=OsAffx.5190.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0301011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02960Os.32682.1.S1_at11/117+1100153..1103688expressed protein
LOC_Os07g02960Os.32682.2.S1_x_at11/117+1100153..1103688expressed protein
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5190.1.S1_at--1000--7271Chr07:1128730..1128754 (25 bp)
GTGCGAAGTTTCACTGCGTGGGTTT
LOC_Os07g03010
OsAffx.5190.1.S1_at--706--2951Chr07:1128759..1128783 (25 bp)
AATGCGGAACGATCGTCGAGGGCAA
LOC_Os07g03010
OsAffx.5190.1.S1_at--770--3991Chr07:1128772..1128796 (25 bp)
CGTCGAGGGCAAACCTTCTATCAAA
LOC_Os07g03010
OsAffx.5190.1.S1_at--262--5351Chr07:1128797..1128821 (25 bp)
GAAGTTCCGCACCTGAAAGTTAACA
LOC_Os07g03010
OsAffx.5190.1.S1_at--345--3591Chr07:1128820..1128844 (25 bp)
CATTATCTATATGCCGCATGGCTCT
LOC_Os07g03010
OsAffx.5190.1.S1_at--438--851Chr07:1128941..1128965 (25 bp)
ATGGAACAGATCATGCTGCCAAAGG
LOC_Os07g03010
OsAffx.5190.1.S1_at--853--4851Chr07:1128995..1129019 (25 bp)
GCTAGAGTGTACCAGATGCTTTGGA
LOC_Os07g03010
OsAffx.5190.1.S1_at--426--3291Chr07:1129110..1129134 (25 bp)
CAAAGCTGCTGCGTGGAATGGATCA
LOC_Os07g03010
OsAffx.5190.1.S1_at--284--1251Chr07:1129153..1129177 (25 bp)
AGTTGTGACCTGTGACTTCATCTGT
LOC_Os07g03010
OsAffx.5190.1.S1_at--1152--8931Chr07:1129165..1129189 (25 bp)
TGACTTCATCTGTGACTTCCTTAAC
LOC_Os07g03010
OsAffx.5190.1.S1_at--527--10651Chr07:1129181..1129205 (25 bp)
TTCCTTAACCTCTGGGCTGCTCATG
LOC_Os07g03010
Target Sequence 
GTGCGAAGTTTCACTGCGTGGGTTTGGAGAATGCGGAACGATCGTCGAGGGCAAACCTTCTATCAAAGAAGTTCCGCACC
TGAAAGTTAACATTATCTATATGCCGCATGGCTCTTCAGGAGACCTATTCCCAACAGTCGAGAGTTCTGTGGTAGAGGTG
ATTAATGCTAATGAGCAACATTGCTTGCACACAAACATTGCCTTACAACAAATGGAACAGATCATGCTGCCAAAGGCTGT
AGATTGTTTTCATCAGAATGCAAAAGCTAGAGTGTACCAGATGCTTTGGAAGTCTAAACATGGCGGTGCATATCTTGAGG
TTGTGAAGGCAACCATGAACATGACGAGCACACGGAGAACCATTCGAGGAGCCAAGAAAGCAAAGCTGCTGCGTGGAATG
GATCAGAGAACGCAGAGGCGCACAGTTGTGACCTGTGACTTCATCTGTGACTTCCTTAACCTCTGGGCTGCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis