Browse Element(s) Details


Os.36226.1.S1_at

Description gb:AK064136.1
DB_XREF= gi:32974154
TID=Os.36226.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0022B05.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G06, full insert sequence.
FL= gb:AK064136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36226.1.S1_at--488--4171Chr07:1143522..1143546 (25 bp)
CGCCTCTTCTGCTAATATGTGGTGA
LOC_Os07g03030
Os.36226.1.S1_at--449--2111Chr07:1143550..1143574 (25 bp)
ACATGTGGGCCAGTCAGAGAAACAT
LOC_Os07g03030
Os.36226.1.S1_at--925--791Chr07:1143573..1143597 (25 bp)
ATGGTGCTTGACATGTAGGGTTTCA
LOC_Os07g03030
Os.36226.1.S1_at--811--10071Chr07:1143588..1143612 (25 bp)
TAGGGTTTCATGTTAGAGGATTTGC
LOC_Os07g03030
Os.36226.1.S1_at--358--6171Chr07:1143603..1143627 (25 bp)
GAGGATTTGCTTCCTGTCCACCCAC
LOC_Os07g03030
Os.36226.1.S1_at--744--7071Chr07:1143682..1143706 (25 bp)
GTAATATTTTTCCACGTCATAACTG
LOC_Os07g03030
Os.36226.1.S1_at--481--9871Chr07:1143717..1143741 (25 bp)
TACAGCTGAATTTGCCATGGTTTTT
LOC_Os07g03030
Os.36226.1.S1_at--1091--811Chr07:1143733..1143757 (25 bp)
ATGGTTTTTGCGGTGAGGATGCATT
LOC_Os07g03030
Os.36226.1.S1_at--558--7391Chr07:1143759..1143783 (25 bp)
GTGATGCACGGAAATTTTTACTCGC
LOC_Os07g03030
Os.36226.1.S1_at--836--10371Chr07:1143774..1143798 (25 bp)
TTTTACTCGCAATTGTGACATGAAC
LOC_Os07g03030
Os.36226.1.S1_at--1030--5652Chr07:1143790..1143814 (25 bp)
GACATGAACAAATCTCAAGCGTATA
LOC_Os07g03030
Target Sequence 
CGCCTCTTCTGCTAATATGTGGTGACTGACATGTGGGCCAGTCAGAGAAACATGGTGCTTGACATGTAGGGTTTCATGTT
AGAGGATTTGCTTCCTGTCCACCCACAACATGGAAAATATACAGTGAAAATTTACTGTTGGATCTAAAAATAGATGTATA
GTAATATTTTTCCACGTCATAACTGTGAGTAAAATTACAGCTGAATTTGCCATGGTTTTTGCGGTGAGGATGCATTGGTG
ATGCACGGAAATTTTTACTCGCAATTGTGACATGAACAAATCTCAAGCGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis