Browse Element(s) Details


Os.49891.1.S1_at

Description gb:AK103212.1
DB_XREF= gi:32988421
TID=Os.49891.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122M09, full insert sequence.
FL= gb:AK119295.1 gb:AK103212.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49891.1.S1_at--47--2491Chr07:1160394..1160418 (25 bp)
AACAGCACACCAGCTTCTCTGGAAG
LOC_Os07g03060
Os.49891.1.S1_at--744--1071Chr07:1160491..1160515 (25 bp)
AGGGAAGCAACTGTGTCGAGACGAC
LOC_Os07g03060
Os.49891.1.S1_at--950--2511Chr07:1160519..1160543 (25 bp)
AACTTGATCTGGAGAGCCGGGCAGA
LOC_Os07g03060
Os.49891.1.S1_at--193--8711Chr07:1160586..1160610 (25 bp)
TGTCCAGATGCAGCGCTCAATTGTA
LOC_Os07g03060
Os.49891.1.S1_at--765--1651Chr07:1160597..1160621 (25 bp)
AGCGCTCAATTGTAGACTGGATTCA
LOC_Os07g03060
Os.49891.1.S1_at--208--5311Chr07:1160628..1160652 (25 bp)
GAAGGAAGTGCAGTTAGCGCCAACA
LOC_Os07g03060
Os.49891.1.S1_at--752--1631Chr07:1160643..1160667 (25 bp)
AGCGCCAACACCATTCTAGAATTCT
LOC_Os07g03060
Os.49891.1.S1_at--842--5851Chr07:1160736..1160760 (25 bp)
GAGCCTTGTTCAGTCTTAATTTCTA
LOC_Os07g03060
Os.49891.1.S1_at--207--2731Chr07:1160805..1160829 (25 bp)
AAGCACAGTCTGTTCAGCTCAGCAT
LOC_Os07g03060
Os.49891.1.S1_at--1065--6231Chr07:1160887..1160911 (25 bp)
GATGGGTAATCGTTCTTTTTATCTG
LOC_Os07g03060
Os.49891.1.S1_at--128--10331Chr07:1160916..1160940 (25 bp)
TTTCTTGTCTAATCTTTTGCCATCA
LOC_Os07g03060
Target Sequence 
AACAGCACACCAGCTTCTCTGGAAGTCAAAACATGAAGCTGCATTCTTTCATTTGGGGAAGACGAGAATGAATATGCCGA
GCACATTGAGCACTGCTAGGGAAGCAACTGTGTCGAGACGACAGGAACTTGATCTGGAGAGCCGGGCAGATGTGATCTCT
GAGTTCCTCAAGTTGTGGGTTGAGCGTGCGCCTGTCCAGATGCAGCGCTCAATTGTAGACTGGATTCAGAAAGAGAAGGA
AGTGCAGTTAGCGCCAACACCATTCTAGAATTCTAGATCATGTAAGAGAGATCGATGAGGGTAACAAGGGGAATGGATAG
GAAGTTCTTCATGATGAGAAATGAGCCTTGTTCAGTCTTAATTTCTAAGCCAGCAATAACTTGGTATGTACAATNGGGTT
TCATGAAAGTGAAGCACAGTCTGTTCAGCTCAGCATATAAGCAAGCTGGTAATAACATGGTGTTGAAATATTACGCNAGA
AATCCGTTCACTGGATGGGTAATCGTTCTTTTTATCTGAATTTTTCTTGTCTAATCTTTTGCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis