Browse Element(s) Details


OsAffx.16056.1.S1_at

Description gb:NM_194207.1
DB_XREF= gi:34915451
TID=OsAffx.16056.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0022B05.40), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0302011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02970Os.18570.1.S1_at11/117+1105139..1107130expressed protein
LOC_Os07g02980Os.33868.1.S1_at7/117+1108798..1110321hypothetical protein
LOC_Os07g02990Os.23216.2.S1_x_at11/117+1112268..1114597expressed protein
LOC_Os07g02990Os.23216.1.S1_at11/117+1112268..1114597expressed protein
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16056.1.S1_at--304--7731Chr07:1132777..1132801 (25 bp)
GGTGTTGCTTTGGTACCAGAACCAT
LOC_Os07g03020
OsAffx.16056.1.S1_at--26--3951Chr07:1132828..1132852 (25 bp)
CGGAATTCTACTACGTTTGGCAGCA
LOC_Os07g03020
OsAffx.16056.1.S1_at--323--1051Chr07:1132947..1132971 (25 bp)
AGGTGCACCATCGAGCCTTGTACTG
LOC_Os07g03020
OsAffx.16056.1.S1_at--759--6171Chr07:1133008..1133032 (25 bp)
GAGGAGGACCCACCATTCAGAGACT
LOC_Os07g03020
OsAffx.16056.1.S1_at--164--631Chr07:1133056..1133080 (25 bp)
ATGCTGCCAAGGACACAATCACCAT
LOC_Os07g03020
OsAffx.16056.1.S1_at--142--1731Chr07:1133076..1133100 (25 bp)
ACCATGGTAGATACCCGGAGCCGGT
LOC_Os07g03020
OsAffx.16056.1.S1_at--794--6411Chr07:1133101..1133125 (25 bp)
GATCAAATTGGTCGTACGGCGGTAT
LOC_Os07g03020
OsAffx.16056.1.S1_at--23--1951Chr07:1133116..1133140 (25 bp)
ACGGCGGTATATCTCTGCATGGCAG
LOC_Os07g03020
OsAffx.16056.1.S1_at--448--851Chr07:1133134..1133158 (25 bp)
ATGGCAGAAGCCATCATCGTCTTCT
LOC_Os07g03020
OsAffx.16056.1.S1_at--617--871Chr07:1133181..1133205 (25 bp)
ATGGCGATAGGAGGACACCCCTGCT
LOC_Os07g03020
OsAffx.16056.1.S1_at--489--1671Chr07:1133260..1133284 (25 bp)
AGCCCGGAGCGTTGCTGTCGAAGCA
LOC_Os07g03020
Target Sequence 
GGTGTTGCTTTGGTACCAGAACCATGAGAGGCCGGAGAAGAACTTCATTTTCGGAATTCTACTACGTTTGGCAGCAAGCA
CGAACGTGACCGGGATTGTGGCCAGGTGCTTGGAGTTGTTACCACCCAATTTCAAGCCTGTTGCTGAAGCTGCAAAGCAG
GAGCTCACTCAGGTGCACCATCGAGCCTTGTACTGCTTCCCCTTTGTTGATTCTACCGATCCAGAGTACTCGAGGAGGAC
CCACCATTCAGAGACTCACCATGCTCGCCCAAACTCCGCATGCTGCCAAGGACACAATCACCATGGTAGATACCCGGAGC
CGGTGATCAAATTGGTCGTACGGCGGTATATCTCTGCATGGCAGAAGCCATCATCGTCTTCTTCATCATCATCATCATCT
GGTCATGGCGATAGGAGGACACCCCTGCTGCAGCTAACGGCCGTGATCGGGCCGCACGCTTGGCTGGAGGAGCTGCCGCC
CAGAGCCCGGAGCGTTGCTGTCGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis