Browse Element(s) Details


OsAffx.16056.2.S1_x_at

Description tigr:9635.m00212
TID=OsAffx.16056.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0303011/11expressed protein
LOC_Os07g030401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03000OsAffx.21068.1.S1_at11/117+1116085..1119235Leucine Rich Repeat family protein, expressed
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16056.2.S1_x_at--207--9911Chr07:1142903..1142927 (25 bp)
TACTGCTTCCCCTTTGTGGATTCTA
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--694--9192Chr07:1142932..1142956 (25 bp)
TCCAGAGTACTGGAGCATCCACCAT
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--170--2271Chr07:1142980..1143004 (25 bp)
AAATCCGGCATGCTGCCATGGCCAG
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--510--5891Chr07:1143026..1143050 (25 bp)
GAGCTGTCAGGGACGACGACATTCC
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--116--5691Chr07:1143043..1143067 (25 bp)
GACATTCCCGGAGCAGGTGATCAAA
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--650--6451Chr07:1143061..1143085 (25 bp)
GATCAAACTGTTCGTGCAGCGGCAT
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--1126--3531Chr07:1143099..1143123 (25 bp)
CATCATCATCTGGTCACGGCGGCGA
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--584--8051Chr07:1143135..1143159 (25 bp)
GGAGATCCTCTGAAGATTCCGGGCC
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--694--4491Chr07:1143275..1143299 (25 bp)
GCCGTGCGAACGGACATCGGATTGC
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--477--7731Chr07:1143304..1143328 (25 bp)
GGTGGATGAGTTTCTTCTGCCTGGC
LOC_Os07g03030
OsAffx.16056.2.S1_x_at--61--7252Chr07:1152874..1152898 (25 bp)
GTCGCCTACCTGTGCGTGGAGAAGA
LOC_Os07g03040
Target Sequence 
TACTGCTTCCCCTTTGTGGATTCTACTGATCCAGAGTACTGGAGCATCCACCATTCCGAGACTCACCGTGCTCGTCCAAA
TCCGGCATGCTGCCATGGCCAGAGCAGAAGCAGTGACATGGTTGAGCTGTCAGGGACGACGACATTCCCGGAGCAGGTGA
TCAAACTGTTCGTGCAGCGGCATGTCTCGGCGCGACCATCATCATCTGGTCACGGCGGCGACGGCGAGAGGAGGAGATCC
TCTGAAGATTCCGGGCCGCCGCCTCTGCTGCAGGTGACGGCCATCTTCGCGCCGCACGCCTCGCCGGAGGAGCTGCCGCC
GTCAGGATCCGAGAGCGCCGCGGTCGTGGCGATCGATGGGAGGGAGGAGCCAGCCGTGCGAACGGACATCGGATTGCGCG
AGGTGGATGAGTTTCTTCTGCCTGGCGCCATCGATCGCCTGTGCCACTGCCACGACGTCCATGGCACGGTGGATGGATCG
TCGGCGGCGGCGGCGTACGAGGTGTTCTGGAGGTCGGGACATGGCGTCGCCTACCTGTGCGTGGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16056.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis