Browse Element(s) Details


Os.32889.1.S1_at

Description gb:AK102508.1
DB_XREF= gi:32987717
TID=Os.32889.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32889 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU097601(C53578)~unknown protein (P0022B05.46), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095G03, full insert sequence.
FL= gb:AK102508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0304011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03010OsAffx.5190.1.S1_at11/117+1125973..1129297hypothetical protein
LOC_Os07g03020OsAffx.16056.1.S1_at11/117+1131804..1133374hypothetical protein
LOC_Os07g03030Os.36226.1.S1_at11/117+1141851..1143829expressed protein
LOC_Os07g03030OsAffx.16056.2.S1_x_at11/117+1141851..1143829expressed protein
LOC_Os07g03030Os.32889.3.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03030Os.26880.1.S1_x_at1/117+1141851..1143829expressed protein
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32889.1.S1_at--429--2191Chr07:1149924..1149948 (25 bp)
ACACAAATGTTCATGCTGCCAAGGG
LOC_Os07g03040
Os.32889.1.S1_at--445--1531Chr07:1150232..1150256 (25 bp)
AGCAGGTCCTCTACTGACATTTTAG
LOC_Os07g03040
Os.32889.1.S1_at--909--7011Chr07:1150346..1150370 (25 bp)
GTACTTAGGAGTGTATTCATCTGAA
LOC_Os07g03040
Os.32889.1.S1_at--173--5591Chr07:1150368..1150392 (25 bp)
GAAATGTTCTACATATACTGCTGTT
LOC_Os07g03040
Os.32889.1.S1_at--278--331Chr07:1150382..1150406 (25 bp)
ATACTGCTGTTGTTTGTCTCGTCAG
LOC_Os07g03040
Os.32889.1.S1_at--553--8771Chr07:1150392..1150416 (25 bp)
TGTTTGTCTCGTCAGTTATGTTGGC
LOC_Os07g03040
Os.32889.1.S1_at--510--6471Chr07:1150424..1150448 (25 bp)
GATAACATGATGTTCTTGCCCTAGA
LOC_Os07g03040
Os.32889.1.S1_at--63--6291Chr07:1150432..1150456 (25 bp)
GATGTTCTTGCCCTAGAAGTCTAAT
LOC_Os07g03040
Os.32889.1.S1_at--290--5331Chr07:1150447..1150471 (25 bp)
GAAGTCTAATGTACCAGCCTTGCTC
LOC_Os07g03040
Os.32889.1.S1_at--30--9771Chr07:1150453..1150477 (25 bp)
TAATGTACCAGCCTTGCTCATTCGA
LOC_Os07g03040
Os.32889.1.S1_at--720--4811Chr07:1150468..1150492 (25 bp)
GCTCATTCGATGTGTCTGGTTTCAT
LOC_Os07g03040
Target Sequence 
ACACAAATGTTCATGCTGCCAAGGGCTGTAGATTGTTTTCGTCAGAATGCAAAAGCAACAGCGTATCAGATGCTTTGGAA
GTCTAAACATGGTGGTGCATTTCTTCAGGCTGTGAAGGCAACAATGAACATGCGGAGCACACGGAGAACCATTCGAGGAG
CCAGGAAAGCAAAGATGTTGCGACGACATGATCGCCGGACACACAATCACAGACATGAGGTCGCTGACTTCCTCAGCCTT
TGGGCTGTGCATGCACCTGTCCGGCTTCAGGGCTCACTCCTTGACTGGATTCGGAAGGAGAAGAAAGTAGCAGGTCCTCT
ACTGACATTTTAGATGATGTAATAGGGACTAGAAGGGAAACAGGGATAATTAAAATTAAAAGAATGGGGGAGAAAAGTAA
CATGTAGGGAGTTGGTTTCTAAGTACTTAGGAGTGTATTCATCTGAAATGTTCTACATATACTGCTGTTGTTTGTCTCGT
CAGTTATGTTGGCAAATGGTGATAACATGATGTTCTTGCCCTAGAAGTCTAATGTACCAGCCTTGCTCATTCGATGTGTC
TGGTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis