Browse Element(s) Details


OsAffx.16058.1.S1_at

Description tigr:9635.m00218
TID=OsAffx.16058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0309011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03040Os.32889.1.S1_at11/117+1147696..1152945expressed protein
LOC_Os07g03040Os.32889.3.S1_x_at11/117+1147696..1152945expressed protein
LOC_Os07g03040OsAffx.16056.2.S1_x_at1/117+1147696..1152945expressed protein
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein
LOC_Os07g03130Os.30681.1.S1_at11/117+1197488..1199557expressed protein
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16058.1.S1_at--109--9451Chr07:1175553..1175577 (25 bp)
TCGGCATGGCTGTACTCGTCGGAGA
LOC_Os07g03090
OsAffx.16058.1.S1_at--608--5991Chr07:1175574..1175598 (25 bp)
GAGACCGGAACATGGAGCGCGCCTT
LOC_Os07g03090
OsAffx.16058.1.S1_at--172--1911Chr07:1175683..1175707 (25 bp)
ACGGTAGGAACATCCTGCGCTACGA
LOC_Os07g03090
OsAffx.16058.1.S1_at--138--2691Chr07:1175715..1175739 (25 bp)
AAGCTGGACCTGACGGTGATCGCCT
LOC_Os07g03090
OsAffx.16058.1.S1_at--564--10751Chr07:1175764..1175788 (25 bp)
TTGAGAATCATCTCCTCATGACGAC
LOC_Os07g03090
OsAffx.16058.1.S1_at--409--2551Chr07:1175839..1175863 (25 bp)
AACTCTGGTCGTGGAAGCCGGTGTC
LOC_Os07g03090
OsAffx.16058.1.S1_at--570--10111Chr07:1175988..1176012 (25 bp)
TATGATGGTGCCCAGGTTGTCCAGC
LOC_Os07g03090
OsAffx.16058.1.S1_at--632--10811Chr07:1176004..1176028 (25 bp)
TTGTCCAGCAGATTGAGCTCAGCAC
LOC_Os07g03090
OsAffx.16058.1.S1_at--664--5911Chr07:1176018..1176042 (25 bp)
GAGCTCAGCACACTCAAGGTGACGA
LOC_Os07g03090
OsAffx.16058.1.S1_at--427--9591Chr07:1176066..1176090 (25 bp)
TCTTGTGTTCTTCCTTACATGAGCT
LOC_Os07g03090
OsAffx.16058.1.S1_at--21--10491Chr07:1176080..1176104 (25 bp)
TTACATGAGCTTCTTTCTCCCAGGT
LOC_Os07g03090
Target Sequence 
TCGGCATGGCTGTACTCGTCGGAGACCGGAACATGGAGCGCGCCTTCCACCGTTCGCCACCACAACGCCGAACCCTTCCC
CAAGCCCAGCGTCCTCGCCGGCGACGGCGCCGTCTACTTCCTCACCTGGCACGGTAGGAACATCCTGCGCTACGACCTGC
GCAAGCTGGACCTGACGGTGATCGCCTCGCCGGAGATAGACGACGACGACTTTGAGAATCATCTCCTCATGACGACGGAG
GACGGCGGGATGGGGCTCGCCCGCTTGGTCTCAGGTCACTCCCTCCAACTCTGGTCGTGGAAGCCGGTGTCGGCGGCGGC
GGCGTGGGTGCAGCTCAGGGTGATCGACCTCGACCTCGTGATTCCCGGCGACGCCATGCGACCTCGTCTGTTGGGCTTCG
CAGAGGGCACCGACATGGTGTTCGTGGACACTACGTATGATGGTGCCCAGGTTGTCCAGCAGATTGAGCTCAGCACACTC
AAGGTGACGAAGGTGTTGGACGAGTGCTACGCCTCTTGTGTTCTTCCTTACATGAGCTTCTTTCTCCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis