Browse Element(s) Details


OsAffx.16059.1.S1_at

Description tigr:9635.m00221
TID=OsAffx.16059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0312011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein
LOC_Os07g03130Os.30681.1.S1_at11/117+1197488..1199557expressed protein
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16059.1.S1_at--336--3931Chr07:1192894..1192918 (25 bp)
CGGCGCGGGTGCTGGAGGATGTCGC
LOC_Os07g03120
OsAffx.16059.1.S1_at--876--7571Chr07:1192947..1192971 (25 bp)
GGGCGGCGCTTCTTCCTCTGCGACG
LOC_Os07g03120
OsAffx.16059.1.S1_at--380--6251Chr07:1192979..1193003 (25 bp)
GATGGGCTTCGAGGGACCCGTCGCG
LOC_Os07g03120
OsAffx.16059.1.S1_at--1129--1511Chr07:1193145..1193169 (25 bp)
AGCAGCACCACATCCGGATGCGGCG
LOC_Os07g03120
OsAffx.16059.1.S1_at--271--4811Chr07:1193201..1193225 (25 bp)
GCTCGTGTTCGCTCCGCCGGAGGAG
LOC_Os07g03120
OsAffx.16059.1.S1_at--493--6091Chr07:1193232..1193256 (25 bp)
GAGTACGACGCGTCTGATTACTGCA
LOC_Os07g03120
OsAffx.16059.1.S1_at--842--6971Chr07:1193234..1193258 (25 bp)
GTACGACGCGTCTGATTACTGCAAG
LOC_Os07g03120
OsAffx.16059.1.S1_at--236--5811Chr07:1193238..1193262 (25 bp)
GACGCGTCTGATTACTGCAAGAGCA
LOC_Os07g03120
OsAffx.16059.1.S1_at--630--9911Chr07:1193250..1193274 (25 bp)
TACTGCAAGAGCAATGCGTCGGCGG
LOC_Os07g03120
OsAffx.16059.1.S1_at--661--7991Chr07:1193332..1193356 (25 bp)
GGAGGCAGTTCGCTACCGATCTCAC
LOC_Os07g03120
OsAffx.16059.1.S1_at--488--931Chr07:1193334..1193358 (25 bp)
AGGCAGTTCGCTACCGATCTCACCG
LOC_Os07g03120
Target Sequence 
CGGCGCGGGTGCTGGAGGATGTCGCGGCGGCGGAGGGGGAGGAGGAGGATGTGGGGCGGCGCTTCTTCCTCTGCGACGCC
GACAAGATGGGCTTCGAGGGACCCGTCGCGGCCGTCGCCGCCGCCGCGGAGCTCCGCCCCGGGCAGATCTACTTCGTGCT
CCCGGGCGAGGTGCGGAGGCGCGGGATGCGCCGCGAGGAGGTCGCGGCGCTCGCCGTCAAGGCATCCGCCGCGCTCGCTG
CCGCCAGCAGCAGCAGCACCACATCCGGATGCGGCGGCGGCCGGCGGCGGCGCGGGTCCGTGGCGCCGCTCGTGTTCGCT
CCGCCGGAGGAGGAGTACGAGTACGACGCGTCTGATTACTGCAAGAGCAATGCGTCGGCGGCGGCGGCGGCGGCGGGGAA
GCGGCGGCCGGTGGCGGCGCGCCGCGGCGGCGGGAAGGGGAGGCAGTTCGCTACCGATCTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis