Browse Element(s) Details


Os.53088.1.S1_at

Description gb:AK070767.1
DB_XREF= gi:32980790
TID=Os.53088.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069J11, full insert sequence.
FL= gb:AK070767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0310011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03050Os.18941.1.S1_at11/117+1154918..1157446expressed protein
LOC_Os07g03060Os.49891.1.S1_at11/117+1158105..1161668expressed protein
LOC_Os07g03060Os.49891.1.S2_at10/117+1158105..1161668expressed protein
LOC_Os07g03070Os.8114.3.S1_at11/117+1164112..1167902TPR Domain containing protein, expressed
LOC_Os07g03080NANA7+1170993..1171614hypothetical protein
LOC_Os07g03090OsAffx.16058.1.S1_at11/117+1174993..1176406F-box domain containing protein
LOC_Os07g03100Os.53088.1.S1_at11/117+1178544..1181268F-box domain containing protein, expressed
LOC_Os07g03110Os.11532.1.S1_at11/117+1181579..1183965F-box domain containing protein, expressed
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein
LOC_Os07g03130Os.30681.1.S1_at11/117+1197488..1199557expressed protein
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53088.1.S1_at--902--4911Chr07:1180683..1180707 (25 bp)
GCTTGTTTTTGGTACCTTTTGTCAG
LOC_Os07g03100
Os.53088.1.S1_at--973--7111Chr07:1180703..1180727 (25 bp)
GTCAGTAGTAGGAATGCTCTCTCAA
LOC_Os07g03100
Os.53088.1.S1_at--172--3851Chr07:1180769..1180793 (25 bp)
CTGCATCTTTTTCAGGTCGTGATAG
LOC_Os07g03100
Os.53088.1.S1_at--226--7111Chr07:1180865..1180889 (25 bp)
GTCAGATCGAGCCTCTAGCTGTTGG
LOC_Os07g03100
Os.53088.1.S1_at--222--10871Chr07:1180886..1180910 (25 bp)
TTGGCCTCTTGGTTGATTACTTGAA
LOC_Os07g03100
Os.53088.1.S1_at--972--2371Chr07:1180925..1180949 (25 bp)
AAACTGTTGACTGAAGCTGATGCAT
LOC_Os07g03100
Os.53088.1.S1_at--199--3691Chr07:1180955..1180979 (25 bp)
CTTTGCTGCTTGGTTAGTAGTCATA
LOC_Os07g03100
Os.53088.1.S1_at--693--10311Chr07:1181014..1181038 (25 bp)
TTTCTTTTGGTGTTGCTGTGAGTGC
LOC_Os07g03100
Os.53088.1.S1_at--1056--7171Chr07:1181097..1181121 (25 bp)
GTCTGTGTGGTGTGTCATTCCATTA
LOC_Os07g03100
Os.53088.1.S1_at--160--991Chr07:1181122..1181146 (25 bp)
AGGAGTTCAGACACAGACACACAAA
LOC_Os07g03100
Os.53088.1.S1_at--687--2711Chr07:1181146..1181170 (25 bp)
AAGCATGGTGTGTCATTCCATTAAG
LOC_Os07g03100
Target Sequence 
GCTTGTTTTTGGTACCTTTTGTCAGTAGTAGGAATGCTCTCTCAAAATACTTTGTGAATATTGGTTGTAAAACGATTATA
ACTTTTCTGCATCTTTTTCAGGTCGTGATAGAAACAAATTGCCATCTCCAACAATTATAGCATCAATTTAGCAAACAAAA
TGGGTCCAAATTATGCTAATACGTCAGATCGAGCCTCTAGCTGTTGGCCTCTTGGTTGATTACTTGAAGCTAGTGATGTG
CAAAACTGTTGACTGAAGCTGATGCATCCCTTCTTTGCTGCTTGGTTAGTAGTCATAAGAAATTTGATAGGTTGAGAGGA
TTCTTCAGAAATTTCTTTTGGTGTTGCTGTGAGTGCTTTATTACACTGCTAAATGAAGAGACGATTTCTTATTTTTGGTG
TGTGTGTACTGTGTGTCTGTGTGGTGTGTCATTCCATTAAGGAGTTCAGACACAGACACACAAAAGCATGGTGTGTCATT
CCATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis