Browse Element(s) Details


OsAffx.16060.1.S1_at

Description tigr:9635.m00224
TID=OsAffx.16060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0315011/11f13j11 PRLI-interacting factor G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03120OsAffx.16059.1.S1_at11/117+1192708..1193390expressed protein
LOC_Os07g03130Os.30681.1.S1_at11/117+1197488..1199557expressed protein
LOC_Os07g03140NANA7+1200894..1204643ternary complex factor MIP1, putative, expressed
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16060.1.S1_at--868--511Chr07:1212721..1212745 (25 bp)
ATCGAACTTGTTTCGCCAAGCTTCT
LOC_Os07g03150
OsAffx.16060.1.S1_at--443--6471Chr07:1212627..1212651 (25 bp)
GATAACCTCCTCTGGTTAGCTGAGA
LOC_Os07g03150
OsAffx.16060.1.S1_at--1102--3471Chr07:1212526..1212550 (25 bp)
CAGGATACCAGTGATGCACCGGCAT
LOC_Os07g03150
OsAffx.16060.1.S1_at--966--451Chr07:1212503..1212527 (25 bp)
ATCTCATCAGCTGTGTCACTGCAAG
LOC_Os07g03150
OsAffx.16060.1.S1_at--94--2971Chr07:1212482..1212506 (25 bp)
CAAGGCTCTTCGTCGCGGTAGGGAA
LOC_Os07g03150
OsAffx.16060.1.S1_at--318--5571Chr07:1212460..1212484 (25 bp)
GAAAGGCGAGGCGTTACCGTCTAAG
LOC_Os07g03150
OsAffx.16060.1.S1_at--422--8331Chr07:1212407..1212431 (25 bp)
GGCTCCAGCCTCTGATGGATGATTA
LOC_Os07g03150
OsAffx.16060.1.S1_at--457--7951Chr07:1212329..1212353 (25 bp)
GGATAGGGCAGACCATCCTGACGCT
LOC_Os07g03150
OsAffx.16060.1.S1_at--434--111Chr07:1212282..1212306 (25 bp)
ATTCTGCTCACCTGGCTTGGAAGAT
LOC_Os07g03150
OsAffx.16060.1.S1_at--686--6491Chr07:1212243..1212267 (25 bp)
GATAGCTGCCCAAATCTTCAGAGAG
LOC_Os07g03150
OsAffx.16060.1.S1_at--402--8051Chr07:1212200..1212224 (25 bp)
GGAGAACCTTTGTCAGGCCTTACAC
LOC_Os07g03150
Target Sequence 
ATCGAACTTGTTTCGCCAAGCTTCTGAACCTGAATTTTCTGAGCAATCTTCAGACAGTAAAGAGGTGATCTTTAGACAGA
TCACTCTAGAGGCTGATAACCTCCTCTGGTTAGCTGAGATCTTAGCTGACAGAAATGCAGCTGATGAGCTGACATCAATT
TGGGCAAGCCAGGGAGAGCTGGCCAAGCTGCATTGCAGGATACCAGTGATGCACCGGCATCTCATCAGCTGTGTCACTGC
AAGGCTCTTCGTCGCGGTAGGGAAAGGCGAGGCGTTACCGTCTAAGGAGACGAGGCAGCTCCTCCTTGATGTGTGGCTCC
AGCCTCTGATGGATGATTACAACTGGTTGCAGCATGGCTGCAGGTGGTTTGATCGGAAGGTCATCGAGGAAGGGATAGGG
CAGACCATCCTGACGCTGCCATTGGAGGATCAGCAGAGCATTCTGCTCACCTGGCTTGGAAGATTTCTCAAGGTTGGAGA
TAGCTGCCCAAATCTTCAGAGAGCATTCGAGGTGTGGTGGAGGAGAACCTTTGTCAGGCCTTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis