Browse Element(s) Details


Os.56093.1.S1_at

Description gb:AK109248.1
DB_XREF= gi:32994457
TID=Os.56093.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-H03, full insert sequence.
FL= gb:AK109248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0317011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03150OsAffx.16060.1.S1_at11/117+1212157..1216052f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56093.1.S1_at--803--1051Chr07:1238334..1238358 (25 bp)
AGGGTAGCTGCCGTGGCATGAACCA
LOC_Os07g03170
Os.56093.1.S1_at--761--5551Chr07:1238260..1238284 (25 bp)
GAAAGCGAAGGACACGAACACACGA
LOC_Os07g03170
Os.56093.1.S1_at--36--2191Chr07:1238243..1238267 (25 bp)
ACACACGACGTGTTCTTGTTCAAAT
LOC_Os07g03170
Os.56093.1.S1_at--1050--5751Chr07:1238237..1238261 (25 bp)
GACGTGTTCTTGTTCAAATTTCGAT
LOC_Os07g03170
Os.56093.1.S1_at--811--9691Chr07:1238224..1238248 (25 bp)
TCAAATTTCGATGTTTTCTTTTTCT
LOC_Os07g03170
Os.56093.1.S1_at--1122--9091Chr07:1238197..1238221 (25 bp)
TGCTCCAAAATTTGCAGCTGCGATC
LOC_Os07g03170
Os.56093.1.S1_at--337--5071Chr07:1238184..1238208 (25 bp)
GCAGCTGCGATCTGTAATTCTTGTT
LOC_Os07g03170
Os.56093.1.S1_at--1073--4031Chr07:1238177..1238201 (25 bp)
CGATCTGTAATTCTTGTTGTTTGCC
LOC_Os07g03170
Os.56093.1.S1_at--158--6651Chr07:1238162..1238186 (25 bp)
GTTGTTTGCCACTATTGATCTTCAT
LOC_Os07g03170
Os.56093.1.S1_at--41--10431Chr07:1238133..1238157 (25 bp)
TTATATTGTTCTTGTTCATCTGTAA
LOC_Os07g03170
Os.56093.1.S1_at--905--6731Chr07:1238120..1238144 (25 bp)
GTTCATCTGTAAACATCCCATTAAG
LOC_Os07g03170
Target Sequence 
AGGGTAGCTGCCGTGGCATGAACCACCGCCGCCGATCGCCGCCGGCGATTCTTGCGTGCGGTGAGGCGTAGAACGAAAGC
GAAGGACACGAACACACGACGTGTTCTTGTTCAAATTTCGATGTTTTCTTTTTCTTCTGCTCCAAAATTTGCAGCTGCGA
TCTGTAATTCTTGTTGTTTGCCACTATTGATCTTCATTTTTTTATATTGTTCTTGTTCATCTGTAAACATCCCATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis