Browse Element(s) Details


OsAffx.22040.1.S1_x_at

Description gb:NM_188772.1
DB_XREF= gi:34904627
GEN=OSJNBa0004G10.26
TID=OsAffx.22040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0004G10.26 (OSJNBa0004G10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g401601/11hypothetical protein
LOC_Os07g032101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40160OsAffx.22040.2.S1_at10/1112+24823818..24827253hypothetical protein
LOC_Os12g40160OsAffx.22040.1.S1_x_at1/1112+24823818..24827253hypothetical protein
LOC_Os12g40170OsAffx.7840.1.S1_at11/1112+24829250..24829504hypothetical protein
LOC_Os12g40180Os.50198.1.S1_at10/1112+24838217..24838785expressed protein
LOC_Os12g40190Os.27677.1.S1_at11/1112+24838938..24843663extra-large guanine nucleotide binding protein, putative, expressed
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22040.1.S1_x_at--336--1856Chr06:30324747..30324809 (25 bp)
ACGAATGAGCCGAGACGATGCCGCC
NONE
OsAffx.22040.1.S1_x_at--775--6355Chr03:28142549..28142573 (25 bp)
GATGCCGCCACGCAAATGACGTTGC
NONE
OsAffx.22040.1.S1_x_at--419--4513Chr01:8104814..8104838 (25 bp)
GCCGCCGAAGCCCACGTCGGAATTT
NONE
OsAffx.22040.1.S1_x_at--58--3233Chr01:8104862..8104886 (25 bp)
CAAGATCCTCGCTCGGACGCCGCCA
NONE
OsAffx.22040.1.S1_x_at--297--3791Chr01:8104889..8104913 (25 bp)
CTCGTCCGCTCCCATATGGACAATG
NONE
OsAffx.22040.1.S1_x_at--602--7253Chr01:8104892..8104916 (25 bp)
GTCCGCTCCCATATGGACAATGCGA
NONE
OsAffx.22040.1.S1_x_at--532--9291Chr01:8104893..8104917 (25 bp)
TCCGCTCCCATATGGACAATGCGAC
NONE
OsAffx.22040.1.S1_x_at--812--4791Chr01:8104896..8104920 (25 bp)
GCTCCCATATGGACAATGCGACTGA
NONE
OsAffx.22040.1.S1_x_at--93--9331Chr01:8104898..8104922 (25 bp)
TCCCATATGGACAATGCGACTGAGG
NONE
OsAffx.22040.1.S1_x_at--443--3571Chr01:8104901..8104925 (25 bp)
CATATGGACAATGCGACTGAGGAGG
NONE
OsAffx.22040.1.S1_x_at--1007--4331Chr01:8104937..8104961 (25 bp)
GCGACGGTGGGAGATACGGACGGCG
NONE
Target Sequence 
ACGAATGAGCCGAGACGATGCCGCCACGCAAATGACGTTGCGTGCGTGCGTGACGCCGCCGCCGCCGAAGCCCACGTCGG
AATTTTTACTACCGCCAGAACTCCTGCTCAAGATCCTCGCTCGGACGCCGCCACACTCGTCCGCTCCCATATGGACAATG
CGACTGAGGAGGCGGACAAGGCGGCGACGGTGGGAGATACGGACGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22040.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis